JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAPOLB_chr7_4852738_4867030	0/0	t0017	2404	2	2	0	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0018	2404	2	2	0	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0019	2380	1	1	0	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0020	2404	1	0	0	1	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0021	2404	1	0	0	0	0	1	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0022	2404	1	1	0	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0023	2404	1	1	0	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0024	2404	1	1	0	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0025	2404	1	1	0	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0026	2404	1	1	0	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0027	2404	1	1	0	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0028	2404	1	1	0	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0029	2404	1	1	0	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0030	2404	1	1	0	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0031	2380	1	0	0	0	0	1	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0032	2380	1	0	1	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0033	2380	1	0	0	0	1	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLG_chr2_60751268_60807086	1/0	t0001	5138	158	27	39	64	8	19	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0002	5140	38	19	11	7	0	1	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0003	5159	27	2	5	19	1	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0004	5143	14	4	2	4	2	2	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0005	5154	11	0	1	8	2	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/1	t0006	5148	10	4	3	0	0	2	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0007	5145	7	7	0	0	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0008	5143	6	6	0	0	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0009	5138	6	0	3	3	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0010	5148	4	4	0	0	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0011	5149	4	1	3	0	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0012	5159	3	0	2	0	1	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0013	5139	3	0	2	0	0	1	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0014	5145	3	3	0	0	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0015	5141	3	0	0	2	0	1	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0016	5139	2	0	0	0	0	2	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0017	5138	2	0	0	2	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0018	5153	2	2	0	0	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0019	5146	2	0	0	0	0	2	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0020	5154	2	0	2	0	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0021	5140	1	0	0	0	1	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0022	5138	1	0	1	0	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0023	5128	1	0	0	1	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0024	5138	1	0	1	0	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0025	5138	1	1	0	0	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0026	5138	1	0	1	0	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0027	5153	1	1	0	0	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0028	5153	1	0	0	0	1	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0029	5151	1	0	0	0	0	1	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0030	5143	1	1	0	0	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0031	5144	1	1	0	0	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0032	5158	1	0	0	1	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0033	5143	1	1	0	0	0	0	copy fasta	PAPOLG	chr2	60751268	60807086