Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ASPA_chr17_3470997_3508405	0/0	t0001	4487	120	1	20	92	0	7	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0002	4487	91	10	27	27	6	21	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0003	4476	49	2	4	41	0	2	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/1	t0004	4487	36	10	13	0	5	7	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0005	4489	26	5	3	11	2	5	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0006	4468	22	11	6	0	1	4	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0007	4488	19	12	4	0	2	1	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0008	4480	11	10	1	0	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0009	4485	7	0	0	7	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0010	4484	5	0	0	5	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0011	4481	4	2	2	0	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0012	4487	4	4	0	0	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0013	4481	3	3	0	0	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0014	4488	3	3	0	0	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0015	4471	3	3	0	0	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0016	4488	2	2	0	0	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0017	4489	2	2	0	0	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0018	4487	2	0	0	2	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0019	4487	2	2	0	0	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0020	4487	2	0	0	2	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0021	4487	2	0	2	0	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0022	4478	2	0	0	2	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	1/0	t0023	4481	2	1	0	0	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0024	4487	1	0	0	1	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0025	4494	1	1	0	0	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0026	4485	1	1	0	0	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0027	4481	1	1	0	0	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0028	4480	1	1	0	0	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0029	4487	1	0	0	1	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0030	4487	1	0	0	1	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0031	4476	1	1	0	0	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0032	4486	1	0	0	1	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0033	4489	1	0	0	1	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0034	4488	1	1	0	0	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0035	4489	1	0	0	1	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0036	4488	1	1	0	0	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0037	4488	1	1	0	0	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0038	4487	1	0	0	0	0	1	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0039	4488	1	0	0	0	0	1	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0040	4487	1	0	0	1	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0041	4487	1	0	0	1	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0042	4487	1	0	1	0	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0043	4488	1	0	0	1	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0044	4485	1	0	0	1	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0045	4476	1	1	0	0	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0046	4476	1	0	0	1	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0047	4476	1	0	0	1	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0048	4476	1	0	0	1	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0049	4468	1	0	0	0	0	1	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0050	4468	1	1	0	0	0	0	copy fasta	ASPA	chr17	3470997	3508405