JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAPOLG_chr2_60751268_60807086	0/0	t0034	5160	1	0	0	0	0	1	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0035	5159	1	0	0	1	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0036	5145	1	1	0	0	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0037	5140	1	1	0	0	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0038	5140	1	1	0	0	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0039	5145	1	0	0	0	0	1	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0040	5150	1	1	0	0	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	t0041	5140	1	0	0	0	0	1	copy fasta	PAPOLG	chr2	60751268	60807086
PAPPA2_chr1_176458175_176850601	0/0	t0001	4304	18	5	3	2	3	5	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0002	4304	9	5	0	0	0	4	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/1	t0003	4305	8	0	0	0	3	4	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0004	4308	7	0	3	1	0	3	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0005	4304	7	7	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	1/0	t0006	4308	6	0	2	2	0	1	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0007	4308	4	1	0	0	1	2	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0008	4304	4	3	1	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0009	4308	3	3	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0010	4308	3	1	2	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0011	4305	3	0	3	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0012	4304	2	2	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0013	4304	2	2	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0014	4308	2	2	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0015	4308	2	2	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0016	4304	2	2	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0017	4308	2	2	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0018	4308	2	2	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0019	4304	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0020	4290	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0021	4305	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0022	4308	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0023	4304	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0024	4308	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0025	4308	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0026	4308	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0027	4308	1	0	0	0	1	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0028	4304	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0029	4305	1	0	0	0	0	1	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0030	4305	1	0	1	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0031	4304	1	0	0	0	1	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0032	4305	1	0	1	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0033	4304	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0034	4308	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0035	4305	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0036	4304	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0037	4308	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0038	4304	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0039	4308	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0040	4308	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0041	4308	1	0	0	1	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0042	4304	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601