JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAPPA2_chr1_176458175_176850601	0/0	t0043	4305	1	0	0	0	1	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0044	4304	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0045	4304	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0046	4305	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0047	4304	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0048	4304	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0049	4304	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	t0050	4308	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA_chr9_116148791_116407321	0/1	t0001	6091	31	3	6	16	1	4	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0002	6089	25	9	10	6	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0003	6091	22	4	4	11	0	3	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0004	6088	13	2	5	5	0	1	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0005	6091	12	0	0	7	0	5	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0006	6089	11	6	2	1	0	2	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0007	6088	9	0	0	4	1	4	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0008	6088	9	1	2	2	1	3	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0009	6088	8	2	2	4	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0010	6086	6	0	1	5	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0011	6091	6	0	0	5	0	1	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0012	6090	6	3	3	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0013	6087	6	5	1	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0014	6086	4	0	1	2	0	1	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0015	6090	3	3	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0016	6088	3	3	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0017	6087	3	3	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	1/0	t0018	6088	3	2	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0019	6091	3	0	3	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0020	6088	3	3	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0021	6091	2	0	1	1	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0022	6087	2	0	0	2	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0023	6092	2	0	0	2	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0024	6089	2	2	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0025	6087	1	0	0	0	0	1	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0026	6088	1	0	0	1	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0027	6090	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0028	6089	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0029	6086	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0030	6091	1	0	0	1	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0031	6086	1	0	0	0	0	1	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0032	6089	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0033	6087	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0034	6087	1	0	1	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0035	6090	1	0	0	1	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0036	6088	1	0	1	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0037	6088	1	0	0	0	0	1	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0038	6089	1	0	0	0	1	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0039	6088	1	0	0	0	1	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0040	6089	1	0	0	0	1	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0041	6088	1	0	0	0	0	1	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0042	6088	1	0	1	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321