JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAPPA_chr9_116148791_116407321	0/0	t0043	6088	1	0	0	1	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0044	6088	1	0	0	1	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0045	6090	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0046	6089	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0047	6089	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0048	6089	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0049	6086	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0050	6088	1	0	0	0	1	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0051	6090	1	0	0	1	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0052	6088	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0053	6087	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0054	6087	1	0	0	0	1	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0055	6087	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0056	6090	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0057	6089	1	0	0	1	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0058	6088	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0059	6091	1	0	0	1	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0060	6090	1	0	0	1	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0061	6089	1	0	1	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0062	6091	1	0	1	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0063	6088	1	0	1	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	t0064	6087	1	0	1	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPSS1_chr4_107608666_107725234	1/1	t0001	639	176	50	33	63	8	20	copy fasta	PAPSS1	chr4	107608666	107725234
PAPSS1_chr4_107608666_107725234	0/0	t0002	639	63	4	13	38	2	6	copy fasta	PAPSS1	chr4	107608666	107725234
PAPSS1_chr4_107608666_107725234	0/0	t0003	639	12	10	2	0	0	0	copy fasta	PAPSS1	chr4	107608666	107725234
PAPSS1_chr4_107608666_107725234	0/0	t0004	640	10	4	0	4	0	2	copy fasta	PAPSS1	chr4	107608666	107725234
PAPSS1_chr4_107608666_107725234	0/0	t0005	639	9	9	0	0	0	0	copy fasta	PAPSS1	chr4	107608666	107725234
PAPSS1_chr4_107608666_107725234	0/0	t0006	639	2	0	0	0	0	2	copy fasta	PAPSS1	chr4	107608666	107725234
PAPSS1_chr4_107608666_107725234	0/0	t0007	639	1	0	0	1	0	0	copy fasta	PAPSS1	chr4	107608666	107725234
PAPSS1_chr4_107608666_107725234	0/0	t0008	639	1	1	0	0	0	0	copy fasta	PAPSS1	chr4	107608666	107725234
PAPSS1_chr4_107608666_107725234	0/0	t0009	639	1	0	0	1	0	0	copy fasta	PAPSS1	chr4	107608666	107725234
PAPSS1_chr4_107608666_107725234	0/0	t0010	639	1	0	0	1	0	0	copy fasta	PAPSS1	chr4	107608666	107725234
PAPSS2_chr10_87654878_87752705	0/1	t0001	1840	72	5	15	35	4	12	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	1/0	t0002	1840	56	3	11	35	3	3	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0003	1841	44	0	2	39	0	3	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0004	1842	25	6	9	8	0	2	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0005	1843	19	5	6	4	1	3	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0006	1842	18	0	5	10	0	3	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0007	1843	14	2	4	4	0	4	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0008	1844	11	3	1	6	0	1	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0009	1849	10	10	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0010	1841	8	0	0	8	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0011	1841	7	7	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0012	1841	6	3	0	3	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0013	1845	6	0	0	6	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0014	1840	5	5	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0015	1845	5	2	2	0	1	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0016	1841	3	3	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0017	1840	3	0	0	3	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0018	1845	3	0	1	0	2	0	copy fasta	PAPSS2	chr10	87654878	87752705