JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAPSS2_chr10_87654878_87752705	0/0	t0019	1845	3	3	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0020	1844	3	3	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0021	1853	3	3	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0022	1839	2	0	0	2	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0023	1842	2	1	0	0	1	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0024	1841	2	1	1	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0025	1841	2	2	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0026	1852	2	0	2	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0027	1840	1	0	0	1	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0028	1842	1	0	0	1	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0029	1840	1	0	0	1	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0030	1842	1	1	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0031	1842	1	0	0	1	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0032	1841	1	0	0	1	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0033	1841	1	0	0	1	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0034	1843	1	0	1	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0035	1840	1	0	0	1	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0036	1841	1	1	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0037	1843	1	1	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0038	1840	1	1	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0039	1844	1	0	0	0	0	1	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0040	1844	1	1	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0041	1844	1	1	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0042	1845	1	1	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0043	1844	1	1	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0044	1843	1	1	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0045	1843	1	1	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0046	1844	1	1	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0047	1843	1	1	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0048	1843	1	1	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0049	1844	1	1	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0050	1843	1	1	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0051	1845	1	1	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0052	1843	1	1	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0053	1854	1	1	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0054	1846	1	1	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0055	1848	1	1	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0056	1847	1	1	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0057	1850	1	0	1	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0058	1850	1	0	1	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0059	1850	1	0	1	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0060	1849	1	1	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0061	1851	1	1	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0062	1852	1	1	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0063	1854	1	0	1	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	t0064	1841	1	1	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAQR3_chr4_78906878_78944438	0/0	t0001	8871	120	14	23	62	10	11	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	1/0	t0002	8876	54	9	12	21	0	11	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0003	8876	44	0	1	40	1	2	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0004	8876	10	9	1	0	0	0	copy fasta	PAQR3	chr4	78906878	78944438