JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAQR3_chr4_78906878_78944438	0/0	t0005	8876	9	0	0	9	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0006	8876	7	0	6	1	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0007	8872	6	6	0	0	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0008	8872	6	6	0	0	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0009	8871	6	5	1	0	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0010	8871	6	6	0	0	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0011	8872	5	5	0	0	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0012	8876	5	5	0	0	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0013	8868	4	1	3	0	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0014	8871	4	0	0	0	0	4	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0015	8872	3	3	0	0	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0016	8876	3	3	0	0	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0017	8871	3	3	0	0	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0018	8872	2	2	0	0	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0019	8876	2	0	0	2	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0020	8873	2	0	0	0	0	2	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0021	8871	2	0	0	2	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0022	8876	2	2	0	0	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0023	8876	1	0	0	0	0	1	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0024	8876	1	0	0	1	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0025	8876	1	0	0	1	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0026	8872	1	1	0	0	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0027	8872	1	1	0	0	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0028	8872	1	1	0	0	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0029	8872	1	0	1	0	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0030	8872	1	0	0	0	0	1	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0031	8872	1	0	0	0	0	1	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0032	8872	1	1	0	0	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0033	8876	1	0	0	0	0	1	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0034	8876	1	0	0	1	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0035	8871	1	0	0	1	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0036	8871	1	0	0	1	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0037	8871	1	0	0	1	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0038	8871	1	0	0	0	1	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0039	8871	1	1	0	0	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0040	8871	1	0	0	1	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0041	8871	1	0	0	0	0	1	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0042	8876	1	0	0	0	0	1	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0043	8876	1	1	0	0	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/1	t0044	8878	1	0	0	0	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0045	8876	1	0	0	0	0	1	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0046	8876	1	0	0	1	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0047	8876	1	0	1	0	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0048	8876	1	0	0	1	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0049	8871	1	0	1	0	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0050	8872	1	1	0	0	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	t0051	8871	1	0	0	0	0	1	copy fasta	PAQR3	chr4	78906878	78944438
PAQR4_chr16_2964348_2978484	1/1	t0001	1864	146	28	25	69	7	15	copy fasta	PAQR4	chr16	2964348	2978484
PAQR4_chr16_2964348_2978484	0/0	t0002	1864	111	7	23	66	3	12	copy fasta	PAQR4	chr16	2964348	2978484
PAQR4_chr16_2964348_2978484	0/0	t0003	1864	86	22	24	22	8	10	copy fasta	PAQR4	chr16	2964348	2978484