JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAQR4_chr16_2964348_2978484	0/0	t0004	1864	19	17	2	0	0	0	copy fasta	PAQR4	chr16	2964348	2978484
PAQR4_chr16_2964348_2978484	0/0	t0005	1864	10	0	0	10	0	0	copy fasta	PAQR4	chr16	2964348	2978484
PAQR4_chr16_2964348_2978484	0/0	t0006	1867	7	7	0	0	0	0	copy fasta	PAQR4	chr16	2964348	2978484
PAQR4_chr16_2964348_2978484	0/0	t0007	1864	4	4	0	0	0	0	copy fasta	PAQR4	chr16	2964348	2978484
PAQR4_chr16_2964348_2978484	0/0	t0008	1864	4	0	0	4	0	0	copy fasta	PAQR4	chr16	2964348	2978484
PAQR4_chr16_2964348_2978484	0/0	t0009	1864	3	3	0	0	0	0	copy fasta	PAQR4	chr16	2964348	2978484
PAQR4_chr16_2964348_2978484	0/0	t0010	1864	3	0	3	0	0	0	copy fasta	PAQR4	chr16	2964348	2978484
PAQR4_chr16_2964348_2978484	0/0	t0011	1864	2	1	1	0	0	0	copy fasta	PAQR4	chr16	2964348	2978484
PAQR4_chr16_2964348_2978484	0/0	t0012	1864	2	2	0	0	0	0	copy fasta	PAQR4	chr16	2964348	2978484
PAQR4_chr16_2964348_2978484	0/0	t0013	1864	2	0	0	2	0	0	copy fasta	PAQR4	chr16	2964348	2978484
PAQR4_chr16_2964348_2978484	0/0	t0014	1864	2	0	0	2	0	0	copy fasta	PAQR4	chr16	2964348	2978484
PAQR4_chr16_2964348_2978484	0/0	t0015	1864	1	1	0	0	0	0	copy fasta	PAQR4	chr16	2964348	2978484
PAQR4_chr16_2964348_2978484	0/0	t0016	1864	1	1	0	0	0	0	copy fasta	PAQR4	chr16	2964348	2978484
PAQR4_chr16_2964348_2978484	0/0	t0017	1867	1	1	0	0	0	0	copy fasta	PAQR4	chr16	2964348	2978484
PAQR4_chr16_2964348_2978484	0/0	t0018	1864	1	1	0	0	0	0	copy fasta	PAQR4	chr16	2964348	2978484
PAQR4_chr16_2964348_2978484	0/0	t0019	1864	1	1	0	0	0	0	copy fasta	PAQR4	chr16	2964348	2978484
PAQR4_chr16_2964348_2978484	0/0	t0020	1864	1	0	0	1	0	0	copy fasta	PAQR4	chr16	2964348	2978484
PAQR4_chr16_2964348_2978484	0/0	t0021	1864	1	1	0	0	0	0	copy fasta	PAQR4	chr16	2964348	2978484
PAQR4_chr16_2964348_2978484	0/0	t0022	1864	1	0	0	0	0	1	copy fasta	PAQR4	chr16	2964348	2978484
PAQR4_chr16_2964348_2978484	0/0	t0023	1864	1	1	0	0	0	0	copy fasta	PAQR4	chr16	2964348	2978484
PAQR4_chr16_2964348_2978484	0/0	t0024	1864	1	0	0	1	0	0	copy fasta	PAQR4	chr16	2964348	2978484
PAQR4_chr16_2964348_2978484	0/0	t0025	1864	1	0	0	1	0	0	copy fasta	PAQR4	chr16	2964348	2978484
PAQR5_chr15_69293912_69412780	0/1	t0001	4380	149	42	31	58	5	12	copy fasta	PAQR5	chr15	69293912	69412780
PAQR5_chr15_69293912_69412780	0/0	t0002	4379	59	23	6	29	0	1	copy fasta	PAQR5	chr15	69293912	69412780
PAQR5_chr15_69293912_69412780	0/0	t0003	4380	31	6	2	22	0	1	copy fasta	PAQR5	chr15	69293912	69412780
PAQR5_chr15_69293912_69412780	0/0	t0004	4380	13	0	0	12	0	1	copy fasta	PAQR5	chr15	69293912	69412780
PAQR5_chr15_69293912_69412780	0/0	t0005	4380	5	5	0	0	0	0	copy fasta	PAQR5	chr15	69293912	69412780
PAQR5_chr15_69293912_69412780	0/0	t0006	4380	4	4	0	0	0	0	copy fasta	PAQR5	chr15	69293912	69412780
PAQR5_chr15_69293912_69412780	0/0	t0007	4380	3	0	1	2	0	0	copy fasta	PAQR5	chr15	69293912	69412780
PAQR5_chr15_69293912_69412780	0/0	t0008	4380	2	0	0	0	1	1	copy fasta	PAQR5	chr15	69293912	69412780
PAQR5_chr15_69293912_69412780	0/0	t0009	4380	2	2	0	0	0	0	copy fasta	PAQR5	chr15	69293912	69412780
PAQR5_chr15_69293912_69412780	1/0	t0010	4380	2	1	0	0	0	0	copy fasta	PAQR5	chr15	69293912	69412780
PAQR5_chr15_69293912_69412780	0/0	t0011	4380	1	1	0	0	0	0	copy fasta	PAQR5	chr15	69293912	69412780
PAQR5_chr15_69293912_69412780	0/0	t0012	4380	1	0	1	0	0	0	copy fasta	PAQR5	chr15	69293912	69412780
PAQR5_chr15_69293912_69412780	0/0	t0013	4380	1	0	0	1	0	0	copy fasta	PAQR5	chr15	69293912	69412780
PAQR5_chr15_69293912_69412780	0/0	t0014	4380	1	0	0	1	0	0	copy fasta	PAQR5	chr15	69293912	69412780
PAQR5_chr15_69293912_69412780	0/0	t0015	4380	1	1	0	0	0	0	copy fasta	PAQR5	chr15	69293912	69412780
PAQR5_chr15_69293912_69412780	0/0	t0016	4380	1	0	0	1	0	0	copy fasta	PAQR5	chr15	69293912	69412780
PAQR5_chr15_69293912_69412780	0/0	t0017	4380	1	0	1	0	0	0	copy fasta	PAQR5	chr15	69293912	69412780
PAQR5_chr15_69293912_69412780	0/0	t0018	4380	1	1	0	0	0	0	copy fasta	PAQR5	chr15	69293912	69412780
PAQR5_chr15_69293912_69412780	0/0	t0019	4380	1	1	0	0	0	0	copy fasta	PAQR5	chr15	69293912	69412780
PAQR5_chr15_69293912_69412780	0/0	t0020	4380	1	1	0	0	0	0	copy fasta	PAQR5	chr15	69293912	69412780
PAQR5_chr15_69293912_69412780	0/0	t0021	4380	1	1	0	0	0	0	copy fasta	PAQR5	chr15	69293912	69412780
PAQR5_chr15_69293912_69412780	0/0	t0022	4380	1	1	0	0	0	0	copy fasta	PAQR5	chr15	69293912	69412780
PAQR5_chr15_69293912_69412780	0/0	t0023	4379	1	0	0	1	0	0	copy fasta	PAQR5	chr15	69293912	69412780
PAQR5_chr15_69293912_69412780	0/0	t0024	4379	1	0	0	1	0	0	copy fasta	PAQR5	chr15	69293912	69412780
PAQR6_chr1_156238320_156253056	0/1	t0001	935	318	73	70	127	12	35	copy fasta	PAQR6	chr1	156238320	156253056
PAQR6_chr1_156238320_156253056	1/0	t0002	935	78	14	10	38	4	11	copy fasta	PAQR6	chr1	156238320	156253056
PAQR6_chr1_156238320_156253056	0/0	t0003	935	2	2	0	0	0	0	copy fasta	PAQR6	chr1	156238320	156253056
PAQR6_chr1_156238320_156253056	0/0	t0004	935	1	0	0	1	0	0	copy fasta	PAQR6	chr1	156238320	156253056