JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAQR6_chr1_156238320_156253056	0/0	t0005	935	1	0	0	1	0	0	copy fasta	PAQR6	chr1	156238320	156253056
PAQR6_chr1_156238320_156253056	0/0	t0006	935	1	1	0	0	0	0	copy fasta	PAQR6	chr1	156238320	156253056
PAQR6_chr1_156238320_156253056	0/0	t0007	935	1	0	0	1	0	0	copy fasta	PAQR6	chr1	156238320	156253056
PAQR7_chr1_25856484_25880708	0/0	t0001	1645	108	7	22	55	6	18	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	1/1	t0002	1645	79	10	16	39	3	9	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	t0003	1646	33	0	11	18	0	4	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	t0004	1646	26	4	4	16	0	2	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	t0005	1641	18	16	2	0	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	t0006	1644	15	0	3	5	3	4	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	t0007	1644	14	10	2	2	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	t0008	1636	12	11	1	0	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	t0009	1636	12	10	2	0	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	t0010	1634	6	5	1	0	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	t0011	1634	5	1	1	3	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	t0012	1644	4	0	0	4	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	t0013	1633	4	4	0	0	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	t0014	1645	3	0	0	3	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	t0015	1636	3	1	2	0	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	t0016	1645	3	3	0	0	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	t0017	1645	3	3	0	0	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	t0018	1645	2	2	0	0	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	t0019	1645	1	1	0	0	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	t0020	1635	1	0	0	1	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	t0021	1635	1	1	0	0	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	t0022	1645	1	1	0	0	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	t0023	1634	1	1	0	0	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	t0024	1644	1	1	0	0	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	t0025	1645	1	1	0	0	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	t0026	1644	1	0	0	0	0	1	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	t0027	1645	1	0	0	1	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	t0028	1645	1	1	0	0	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	t0029	1645	1	0	1	0	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	t0030	1645	1	0	0	1	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR8_chr6_52357151_52412777	0/0	t0001	3639	56	5	15	33	0	3	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0002	3650	39	0	5	30	1	3	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0003	3639	18	4	3	5	1	5	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0004	3658	17	0	0	15	0	2	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	1/0	t0005	3651	16	0	3	11	0	1	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0006	3649	15	3	3	7	1	1	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0007	3645	15	0	3	9	1	2	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0008	3651	14	0	2	5	4	3	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0009	3650	12	8	3	1	0	0	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0010	3646	9	7	2	0	0	0	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0011	3659	9	1	1	7	0	0	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0012	3645	9	0	8	0	0	1	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0013	3650	8	0	1	6	0	1	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0014	3655	8	1	0	7	0	0	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0015	3651	7	0	3	0	3	1	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0016	3651	6	3	0	1	0	2	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0017	3652	6	0	2	4	0	0	copy fasta	PAQR8	chr6	52357151	52412777