JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAQR8_chr6_52357151_52412777	0/0	t0068	3650	1	1	0	0	0	0	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0069	3651	1	0	1	0	0	0	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0070	3655	1	1	0	0	0	0	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0071	3639	1	1	0	0	0	0	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0072	3640	1	1	0	0	0	0	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0073	3639	1	0	1	0	0	0	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0074	3651	1	0	0	0	1	0	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0075	3477	1	0	0	1	0	0	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0076	3645	1	0	1	0	0	0	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0077	3655	1	1	0	0	0	0	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0078	3653	1	1	0	0	0	0	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0079	3647	1	1	0	0	0	0	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0080	3652	1	0	0	1	0	0	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0081	3652	1	1	0	0	0	0	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0082	3654	1	1	0	0	0	0	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0083	3664	1	0	0	0	0	1	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0084	3652	1	0	0	1	0	0	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0085	3655	1	0	0	0	0	1	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0086	3652	1	0	0	0	0	1	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	t0087	3651	1	0	0	1	0	0	copy fasta	PAQR8	chr6	52357151	52412777
PAQR9_chr3_142949585_142968674	0/1	t0001	7956	74	0	15	45	3	10	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0002	7956	52	3	9	29	3	8	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0003	7954	48	0	8	37	0	3	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0004	7957	40	2	7	27	0	4	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0005	7950	25	17	3	5	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0006	7955	18	3	9	1	5	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0007	7957	17	1	0	14	0	2	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0008	7955	12	0	0	10	0	2	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0009	7953	9	8	0	1	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0010	7958	9	0	2	6	0	1	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0011	7955	8	5	0	0	2	1	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0012	7951	7	7	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0013	7952	6	0	0	6	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0014	7955	6	0	1	4	1	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0015	7954	6	2	3	0	0	1	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0016	7958	5	0	0	4	0	1	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0017	7956	4	0	2	0	0	2	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0018	7952	3	1	1	0	0	1	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0019	7953	3	3	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0020	7953	3	3	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0021	7957	3	0	0	3	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0022	7955	3	0	2	0	1	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0023	7956	3	3	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0024	7957	2	2	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0025	7947	2	2	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0026	7956	2	0	0	0	2	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0027	7956	2	0	0	2	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0028	7957	2	0	0	2	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0029	7952	2	2	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0030	7954	2	0	0	0	0	2	copy fasta	PAQR9	chr3	142949585	142968674