JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAQR9_chr3_142949585_142968674	0/0	t0031	7958	2	2	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0032	7956	2	1	1	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0033	7937	2	1	1	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0034	7950	2	2	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0035	7953	2	0	0	2	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0036	7958	1	0	0	0	0	1	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0037	7950	1	1	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0038	7951	1	0	1	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0039	7952	1	1	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0040	7958	1	1	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0041	7956	1	0	0	1	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0042	7958	1	0	0	0	0	1	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0043	7957	1	1	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0044	7954	1	0	1	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0045	7953	1	1	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0046	7954	1	1	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0047	7952	1	1	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0048	7953	1	0	1	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0049	7955	1	1	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0050	7956	1	1	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0051	7955	1	0	1	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0052	7956	1	0	1	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0053	7956	1	0	0	0	1	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	1/0	t0054	7957	1	0	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0055	7958	1	0	1	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0056	7956	1	0	0	0	0	1	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0057	7956	1	0	0	1	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0058	7952	1	0	0	1	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0059	7957	1	0	0	1	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0060	7956	1	0	0	1	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0061	7956	1	0	1	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0062	7956	1	0	0	1	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0063	7955	1	0	0	0	0	1	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0064	7956	1	0	1	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0065	7951	1	1	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0066	7952	1	1	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0067	7954	1	0	0	1	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0068	7952	1	1	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0069	7953	1	1	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0070	7938	1	0	1	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0071	7951	1	0	0	1	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0072	7956	1	0	0	0	0	1	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0073	7957	1	1	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0074	7955	1	1	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0075	7955	1	1	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0076	7958	1	0	0	1	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0077	7952	1	1	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0078	7950	1	1	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0079	7958	1	0	0	1	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0080	7954	1	0	1	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674