Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ASPA_chr17_3470997_3508405	0/0	t0051	4468	1	1	0	0	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0052	4488	1	1	0	0	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0053	4482	1	1	0	0	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	t0054	4487	1	0	1	0	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPDH_chr19_50506603_50518913	1/1	t0001	218	371	90	80	144	13	42	copy fasta	ASPDH	chr19	50506603	50518913
ASPDH_chr19_50506603_50518913	0/0	t0002	218	1	0	0	0	1	0	copy fasta	ASPDH	chr19	50506603	50518913
ASPG_chr14_104080700_104120582	0/0	t0001	3110	109	2	33	47	11	16	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0002	3110	90	21	17	39	0	13	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0003	3110	46	6	9	23	3	5	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0004	3110	21	7	10	0	0	4	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	1/0	t0005	3110	15	11	3	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0006	3110	11	9	2	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0007	3110	8	3	0	5	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0008	3110	8	8	0	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0009	3110	6	0	2	0	1	3	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0010	3110	4	4	0	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0011	3110	3	3	0	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0012	3110	3	0	0	3	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0013	3110	3	0	0	3	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0014	3110	3	0	0	3	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0015	3110	3	0	0	3	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0016	3110	3	2	1	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0017	3110	3	3	0	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0018	3110	2	2	0	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/1	t0019	3110	2	1	0	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0020	3110	2	0	0	1	0	1	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0021	3110	2	2	0	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0022	3110	2	2	0	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0023	3110	2	1	1	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0024	3110	2	0	2	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0025	3110	1	1	0	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0026	3110	1	0	0	1	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0027	3110	1	0	0	0	0	1	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0028	3110	1	0	0	1	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0029	3110	1	0	1	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0030	3110	1	0	0	0	1	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0031	3110	1	0	1	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0032	3110	1	0	0	1	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0033	3110	1	0	0	0	0	1	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0034	3110	1	0	0	1	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0035	3110	1	1	0	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0036	3110	1	0	0	1	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0037	3110	1	1	0	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0038	3110	1	1	0	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	t0039	3110	1	1	0	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPHD1_chr16_29895488_29911056	1/1	t0001	644	382	77	68	171	16	48	copy fasta	ASPHD1	chr16	29895488	29911056
ASPHD1_chr16_29895488_29911056	0/0	t0002	647	6	6	0	0	0	0	copy fasta	ASPHD1	chr16	29895488	29911056
ASPHD1_chr16_29895488_29911056	0/0	t0003	644	2	2	0	0	0	0	copy fasta	ASPHD1	chr16	29895488	29911056
ASPHD1_chr16_29895488_29911056	0/0	t0004	644	1	0	0	1	0	0	copy fasta	ASPHD1	chr16	29895488	29911056
ASPHD1_chr16_29895488_29911056	0/0	t0005	644	1	1	0	0	0	0	copy fasta	ASPHD1	chr16	29895488	29911056