JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAQR9_chr3_142949585_142968674	0/0	t0081	7957	1	0	0	1	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0082	7958	1	0	0	0	0	1	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0083	7953	1	1	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0084	7955	1	1	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0085	7957	1	0	0	0	0	1	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0086	7958	1	0	0	0	0	1	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0087	7954	1	1	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0088	7954	1	1	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0089	7954	1	0	0	1	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0090	7954	1	0	0	1	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0091	7954	1	0	0	1	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0092	7955	1	1	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	t0093	7955	1	1	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PARD3B_chr2_204540475_205625162	0/0	t0001	4872	13	12	1	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	t0002	4872	8	5	1	2	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	t0003	4874	7	7	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	t0004	4874	4	4	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	t0005	4872	3	3	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	t0006	4869	2	2	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	t0007	4872	2	2	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	t0008	4874	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	t0009	4874	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	t0010	4872	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	t0011	4869	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	t0012	4874	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	t0013	4874	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	t0014	4872	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	t0015	4872	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	t0016	4872	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	t0017	4872	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	t0018	4872	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	t0019	4872	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	t0020	4872	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	t0021	4872	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	t0022	4872	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3_chr10_34104561_34820296	0/0	t0001	1910	26	11	9	3	1	2	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	t0002	1910	22	11	6	2	2	1	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	t0003	1910	9	7	2	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	t0004	1910	8	7	1	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	t0005	1910	5	3	1	1	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	t0006	1910	3	3	0	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	t0007	1910	3	3	0	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	t0008	1910	3	1	0	2	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	t0009	1910	3	3	0	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	t0010	1910	2	0	0	0	0	2	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	t0011	1910	2	1	0	1	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	t0012	1910	2	2	0	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	t0013	1910	2	2	0	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	t0014	1910	1	0	1	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	t0015	1910	1	0	0	0	1	0	copy fasta	PARD3	chr10	34104561	34820296