JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PARD3_chr10_34104561_34820296	0/0	t0016	1910	1	1	0	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	t0017	1910	1	1	0	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/1	t0018	1910	1	0	0	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	t0019	1910	1	0	0	1	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	t0020	1910	1	1	0	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	t0021	1910	1	0	0	0	0	1	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	t0022	1910	1	1	0	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	1/0	t0023	1910	1	0	0	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD6A_chr16_67655960_67667774	1/1	t0001	207	265	88	53	78	10	34	copy fasta	PARD6A	chr16	67655960	67667774
PARD6A_chr16_67655960_67667774	0/0	t0002	207	1	0	1	0	0	0	copy fasta	PARD6A	chr16	67655960	67667774
PARD6B_chr20_50726580_50758741	0/0	t0001	3442	55	17	9	21	3	5	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0002	3460	32	3	11	9	4	5	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0003	3461	31	4	5	17	1	4	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0004	3460	10	0	0	4	2	4	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0005	3455	9	0	0	9	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0006	3441	9	1	1	6	0	1	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0007	3456	8	2	0	6	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0008	3458	8	1	2	2	0	3	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0009	3453	7	7	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0010	3462	7	1	1	5	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0011	3460	6	4	2	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0012	3446	6	5	1	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0013	3461	5	0	1	0	2	2	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0014	3475	5	0	3	2	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0015	3476	5	0	3	1	0	1	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0016	3478	5	0	3	2	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0017	3456	4	0	0	4	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0018	3470	4	0	0	0	1	3	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0019	3473	4	0	1	3	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0020	3479	4	0	0	4	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0021	3443	4	0	1	0	0	3	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0022	3454	3	0	0	3	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0023	3472	3	0	0	3	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0024	3461	3	2	1	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0025	3462	3	0	0	3	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0026	3462	3	0	1	2	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0027	3466	3	3	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0028	3478	2	0	2	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0029	3441	2	0	1	0	0	1	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0030	3457	2	0	1	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0031	3458	2	2	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0032	3461	2	0	0	2	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0033	3474	2	0	0	2	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0034	3477	2	0	2	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0035	3477	2	0	0	2	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0036	3459	2	0	2	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0037	3461	2	2	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0038	3463	2	1	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0039	3465	2	2	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0040	3438	2	1	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741