JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PARD6B_chr20_50726580_50758741	0/0	t0041	3443	2	1	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0042	3454	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0043	3454	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0044	3455	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0045	3456	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0046	3458	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0047	3458	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0048	3458	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0049	3459	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0050	3459	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0051	3457	1	0	0	0	0	1	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0052	3460	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0053	3460	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0054	3461	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0055	3461	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0056	3461	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0057	3463	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0058	3466	1	0	1	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0059	3470	1	0	0	0	0	1	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0060	3471	1	0	0	0	1	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0061	3472	1	0	0	0	0	1	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0062	3472	1	0	0	0	1	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0063	3472	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0064	3473	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0065	3474	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0066	3487	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0067	3474	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0068	3476	1	0	1	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0069	3476	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0070	3477	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0071	3477	1	0	1	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0072	3477	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0073	3478	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0074	3479	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0075	3479	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0076	3490	1	0	0	0	0	1	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0077	3490	1	0	1	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0078	3492	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0079	3493	1	0	1	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0080	3493	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0081	3495	1	0	0	0	0	1	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0082	3496	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0083	3499	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0084	3500	1	0	1	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0085	3455	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0086	3445	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0087	3444	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0088	3448	1	0	1	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0089	3453	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0090	3453	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741