JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PARD6B_chr20_50726580_50758741	0/0	t0091	3453	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0092	3457	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0093	3458	1	0	1	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0094	3459	1	0	0	0	0	1	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0095	3458	1	0	1	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0096	3459	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0097	3459	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0098	3460	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0099	3456	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0100	3461	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	1/0	t0101	3461	1	0	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0102	3461	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0103	3461	1	0	0	0	0	1	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0104	3461	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0105	3462	1	0	0	0	0	1	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0106	3462	1	0	1	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0107	3460	1	0	1	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0108	3461	1	0	1	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0109	3462	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0110	3462	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0111	3463	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0112	3463	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0113	3459	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0114	3459	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0115	3464	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0116	3463	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0117	3461	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0118	3464	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0119	3439	1	0	1	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0120	3443	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0121	3441	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0122	3445	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0123	3439	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0124	3442	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0125	3446	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0126	3447	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/1	t0127	3445	1	0	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0128	3442	1	0	0	0	1	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0129	3449	1	0	1	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0130	3450	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	t0131	3450	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6G_chr18_80152232_80252514	0/0	t0001	2709	82	1	16	54	3	8	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	1/1	t0002	2706	76	0	13	52	1	8	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0003	2706	56	30	9	12	2	3	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0004	2705	44	10	8	10	3	13	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0005	2709	43	1	11	23	3	5	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0006	2709	19	11	2	6	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0007	2706	13	10	3	0	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0008	2706	7	5	1	1	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0009	2709	6	0	0	6	0	0	copy fasta	PARD6G	chr18	80152232	80252514