JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PARD6G_chr18_80152232_80252514	0/0	t0010	2706	4	3	1	0	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0011	2721	4	4	0	0	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0012	2706	3	2	1	0	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0013	2721	2	2	0	0	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0014	2706	2	2	0	0	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0015	2709	2	0	2	0	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0016	2706	2	0	2	0	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0017	2709	1	1	0	0	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0018	2706	1	0	0	0	0	1	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0019	2706	1	1	0	0	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0020	2705	1	1	0	0	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0021	2705	1	0	1	0	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0022	2709	1	1	0	0	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0023	2706	1	1	0	0	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0024	2706	1	1	0	0	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0025	2706	1	1	0	0	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0026	2710	1	1	0	0	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0027	2705	1	1	0	0	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0028	2709	1	1	0	0	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0029	2709	1	0	1	0	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0030	2709	1	0	1	0	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0031	2706	1	0	0	1	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0032	2706	1	1	0	0	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	t0033	2664	1	0	0	1	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARG_chr10_49813279_49947027	1/1	t0001	1364	178	67	33	59	5	12	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	t0002	1364	90	6	27	46	2	9	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	t0003	1364	17	8	2	6	0	1	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	t0004	1364	3	3	0	0	0	0	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	t0005	1364	1	1	0	0	0	0	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	t0006	1364	1	0	0	0	1	0	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	t0007	1364	1	0	0	1	0	0	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	t0008	1364	1	1	0	0	0	0	copy fasta	PARG	chr10	49813279	49947027
PARK7_chr1_7956711_7990505	0/1	t0001	558	207	66	39	83	10	8	copy fasta	PARK7	chr1	7956711	7990505
PARK7_chr1_7956711_7990505	1/0	t0002	558	143	11	28	69	8	26	copy fasta	PARK7	chr1	7956711	7990505
PARK7_chr1_7956711_7990505	0/0	t0003	558	10	10	0	0	0	0	copy fasta	PARK7	chr1	7956711	7990505
PARK7_chr1_7956711_7990505	0/0	t0004	558	5	4	1	0	0	0	copy fasta	PARK7	chr1	7956711	7990505
PARK7_chr1_7956711_7990505	0/0	t0005	558	2	2	0	0	0	0	copy fasta	PARK7	chr1	7956711	7990505
PARK7_chr1_7956711_7990505	0/0	t0006	558	1	1	0	0	0	0	copy fasta	PARK7	chr1	7956711	7990505
PARK7_chr1_7956711_7990505	0/0	t0007	558	1	0	0	1	0	0	copy fasta	PARK7	chr1	7956711	7990505
PARK7_chr1_7956711_7990505	0/0	t0008	558	1	0	0	1	0	0	copy fasta	PARK7	chr1	7956711	7990505
PARL_chr3_183824271_183889880	1/1	t0001	362	358	80	62	162	16	36	copy fasta	PARL	chr3	183824271	183889880
PARM1_chr4_74928116_75055113	1/1	t0001	4079	61	17	15	16	1	10	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0002	4079	54	6	11	33	2	2	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0003	4083	10	9	1	0	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0004	4080	8	5	3	0	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0005	4080	7	6	1	0	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0006	4080	5	0	5	0	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0007	4079	4	2	2	0	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0008	4079	4	0	0	3	0	1	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0009	4082	4	0	0	4	0	0	copy fasta	PARM1	chr4	74928116	75055113