JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PARM1_chr4_74928116_75055113	0/0	t0010	4083	4	3	0	0	0	1	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0011	4079	3	3	0	0	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0012	4077	3	2	1	0	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0013	4077	2	0	1	0	1	0	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0014	4078	2	2	0	0	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0015	4079	2	2	0	0	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0016	4079	2	0	0	2	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0017	4084	2	2	0	0	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0018	4079	1	1	0	0	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0019	4084	1	1	0	0	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0020	4080	1	1	0	0	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0021	4079	1	0	0	0	0	1	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0022	4079	1	0	0	1	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0023	4079	1	0	0	1	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0024	4079	1	0	1	0	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0025	4081	1	1	0	0	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0026	4080	1	1	0	0	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0027	4082	1	1	0	0	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0028	4078	1	0	1	0	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0029	4084	1	1	0	0	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0030	4080	1	1	0	0	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0031	4079	1	0	0	0	0	1	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	t0032	4080	1	1	0	0	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARN_chr16_14430701_14635260	0/0	t0001	1152	28	10	11	4	2	1	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/0	t0002	1150	25	12	7	6	0	0	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/1	t0003	1144	20	5	6	0	2	6	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/0	t0004	1154	20	5	3	4	3	5	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/0	t0005	1148	17	9	0	6	0	2	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/0	t0006	1156	17	1	0	12	1	3	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/0	t0007	1146	15	6	4	4	1	0	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/0	t0008	1158	4	1	0	3	0	0	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/0	t0009	1150	4	0	0	3	0	1	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/0	t0010	1140	3	1	0	0	0	2	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/0	t0011	1154	2	2	0	0	0	0	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/0	t0012	1142	2	0	1	1	0	0	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/0	t0013	1160	2	0	0	0	1	1	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/0	t0014	1158	1	0	0	0	0	1	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/0	t0015	1120	1	1	0	0	0	0	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/0	t0016	1150	1	1	0	0	0	0	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/0	t0017	1152	1	1	0	0	0	0	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/0	t0018	1162	1	1	0	0	0	0	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/0	t0019	1152	1	0	0	1	0	0	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/0	t0020	1156	1	0	0	1	0	0	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/0	t0021	1152	1	1	0	0	0	0	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/0	t0022	1154	1	0	0	1	0	0	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/0	t0023	1158	1	1	0	0	0	0	copy fasta	PARN	chr16	14430701	14635260
PARP10_chr8_143972158_143991460	1/1	t0001	428	233	33	55	108	9	26	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	t0002	428	91	16	25	29	5	16	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	t0003	428	51	45	2	3	0	1	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	t0004	428	2	0	0	2	0	0	copy fasta	PARP10	chr8	143972158	143991460