JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PARP10_chr8_143972158_143991460	0/0	t0005	428	1	0	0	1	0	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	t0006	428	1	0	0	1	0	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	t0007	428	1	0	0	0	0	1	copy fasta	PARP10	chr8	143972158	143991460
PARP11_chr12_3803861_3878399	0/0	t0001	3412	45	9	0	33	0	3	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0002	3430	43	4	8	27	0	4	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0003	3430	41	1	5	35	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0004	3434	36	2	12	13	3	6	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0005	3440	36	11	9	8	2	6	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0006	3443	25	2	0	18	0	5	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0007	3450	18	0	0	18	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0008	3426	16	13	1	0	0	2	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0009	3432	12	12	0	0	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0010	3426	11	2	1	3	2	3	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/1	t0011	3437	10	2	0	3	1	3	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0012	3430	6	0	5	0	0	1	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0013	3444	6	1	5	0	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0014	3433	6	3	2	0	0	1	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0015	3431	6	5	1	0	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0016	3437	6	0	0	6	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0017	3424	4	0	2	0	0	2	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0018	3454	4	0	0	4	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0019	3443	4	3	1	0	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0020	3434	3	0	2	0	0	1	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0021	3435	3	0	2	1	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0022	3450	3	0	0	3	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0023	3420	3	0	0	2	0	1	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0024	3430	2	0	1	1	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0025	3426	2	0	2	0	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0026	3413	2	0	0	2	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0027	3441	2	0	1	1	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0028	3443	2	0	2	0	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0029	3406	2	0	1	0	0	1	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0030	3440	2	0	2	0	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0031	3458	2	0	0	2	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0032	3446	2	0	0	2	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0033	3452	2	2	0	0	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0034	3446	2	2	0	0	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0035	3430	2	0	0	2	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0036	3439	2	2	0	0	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0037	3428	1	0	0	0	1	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0038	3416	1	0	0	0	0	1	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0039	3411	1	0	0	0	1	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0040	3426	1	0	0	0	0	1	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0041	3437	1	0	0	0	0	1	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0042	3440	1	1	0	0	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0043	3438	1	0	0	1	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0044	3431	1	0	0	1	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0045	3451	1	0	0	1	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0046	3452	1	0	0	0	0	1	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0047	3434	1	0	1	0	0	0	copy fasta	PARP11	chr12	3803861	3878399