JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PARP11_chr12_3803861_3878399	0/0	t0048	3454	1	0	0	1	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0049	3442	1	0	0	1	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0050	3434	1	1	0	0	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0051	3435	1	1	0	0	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0052	3424	1	0	0	1	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0053	3413	1	0	0	1	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0054	3441	1	0	0	1	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0055	3437	1	0	0	0	0	1	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0056	3438	1	1	0	0	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0057	3438	1	1	0	0	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0058	3437	1	0	0	1	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0059	3434	1	0	1	0	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	1/0	t0060	3433	1	0	0	0	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0061	3434	1	0	1	0	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0062	3450	1	1	0	0	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0063	3446	1	1	0	0	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0064	3456	1	1	0	0	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0065	3448	1	1	0	0	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0066	3447	1	0	0	1	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0067	3427	1	0	0	1	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0068	3426	1	1	0	0	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0069	3440	1	1	0	0	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0070	3446	1	1	0	0	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0071	3446	1	1	0	0	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0072	3432	1	1	0	0	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0073	3440	1	1	0	0	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0074	3446	1	0	0	1	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0075	3441	1	0	0	1	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0076	3430	1	1	0	0	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0077	3430	1	0	0	1	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0078	3430	1	0	0	1	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	t0079	3430	1	0	0	1	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP12_chr7_140018749_140067951	0/0	t0001	916	143	33	28	75	3	4	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	1/1	t0002	916	142	14	29	60	7	30	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	t0003	916	46	29	7	0	1	9	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	t0004	916	14	13	1	0	0	0	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	t0005	916	6	0	4	0	1	1	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	t0006	900	2	0	0	0	2	0	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	t0007	899	1	0	0	1	0	0	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	t0008	916	1	1	0	0	0	0	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	t0009	916	1	1	0	0	0	0	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	t0010	889	1	0	0	1	0	0	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	t0011	916	1	0	0	1	0	0	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	t0012	916	1	0	1	0	0	0	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	t0013	916	1	1	0	0	0	0	copy fasta	PARP12	chr7	140018749	140067951
PARP14_chr3_122675839_122735840	0/0	t0001	2289	108	25	15	45	3	20	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	t0002	2288	65	4	7	47	0	7	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	t0003	2288	60	22	9	25	1	3	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	t0004	2289	33	4	5	22	0	2	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/1	t0005	2290	22	7	6	1	4	3	copy fasta	PARP14	chr3	122675839	122735840