JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PARP14_chr3_122675839_122735840	0/0	t0006	2289	16	6	3	1	1	5	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	t0007	2289	13	3	6	3	1	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	t0008	2290	12	8	4	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	t0009	2289	6	0	0	0	2	4	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	1/0	t0010	2289	4	3	0	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	t0011	2288	3	2	1	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	t0012	2289	2	0	0	2	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	t0013	2290	2	0	0	1	0	1	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	t0014	2288	2	1	0	0	0	1	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	t0015	2290	2	0	2	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	t0016	2288	1	0	0	1	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	t0017	2288	1	0	1	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	t0018	2288	1	1	0	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	t0019	2288	1	0	1	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	t0020	2289	1	1	0	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	t0021	2289	1	0	1	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	t0022	2288	1	1	0	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	t0023	2288	1	0	0	0	0	1	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	t0024	2288	1	0	1	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	t0025	2288	1	0	0	1	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	t0026	2289	1	0	0	1	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	t0027	2290	1	0	0	0	1	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	t0028	2289	1	0	0	0	1	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	t0029	2289	1	0	0	0	0	1	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	t0030	2289	1	0	0	1	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	t0031	2289	1	0	0	1	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP15_chr3_122572650_122644047	1/1	t0001	2966	109	18	25	37	7	20	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0002	2966	58	1	4	48	0	5	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0003	2966	36	0	5	22	2	7	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0004	2966	21	4	13	1	2	1	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0005	2966	16	0	8	1	3	4	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0006	2966	16	9	2	4	1	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0007	2966	15	0	1	14	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0008	2966	11	11	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0009	2966	6	6	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0010	2966	5	5	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0011	2966	5	0	3	0	1	1	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0012	2966	4	3	0	1	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0013	2966	4	0	0	4	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0014	2966	4	4	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0015	2965	3	3	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0016	2966	2	1	1	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0017	2966	2	1	1	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0018	2966	2	2	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0019	2966	2	0	0	0	0	2	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0020	2966	2	2	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0021	2966	2	0	0	0	0	2	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0022	2966	2	0	0	0	0	2	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0023	2966	2	1	1	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0024	2966	2	2	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047