JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PARP15_chr3_122572650_122644047	0/0	t0025	2966	2	2	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0026	2966	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0027	2966	1	0	1	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0028	2966	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0029	2966	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0030	2966	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0031	2966	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0032	2966	1	0	0	0	0	1	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0033	2966	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0034	2966	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0035	2966	1	0	0	1	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0036	2966	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0037	2966	1	0	1	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0038	2966	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0039	2966	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0040	2966	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0041	2966	1	0	0	1	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0042	2966	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0043	2966	1	0	0	1	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0044	2966	1	0	0	1	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0045	2966	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0046	2966	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0047	2965	1	1	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	t0048	2966	1	0	0	0	0	1	copy fasta	PARP15	chr3	122572650	122644047
PARP16_chr15_65253099_65291883	1/0	t0001	1766	153	53	41	40	9	9	copy fasta	PARP16	chr15	65253099	65291883
PARP16_chr15_65253099_65291883	0/1	t0002	1766	134	12	24	82	4	11	copy fasta	PARP16	chr15	65253099	65291883
PARP16_chr15_65253099_65291883	0/0	t0003	1766	9	9	0	0	0	0	copy fasta	PARP16	chr15	65253099	65291883
PARP16_chr15_65253099_65291883	0/0	t0004	1766	2	2	0	0	0	0	copy fasta	PARP16	chr15	65253099	65291883
PARP16_chr15_65253099_65291883	0/0	t0005	1766	2	2	0	0	0	0	copy fasta	PARP16	chr15	65253099	65291883
PARP16_chr15_65253099_65291883	0/0	t0006	1766	2	2	0	0	0	0	copy fasta	PARP16	chr15	65253099	65291883
PARP16_chr15_65253099_65291883	0/0	t0007	1766	1	1	0	0	0	0	copy fasta	PARP16	chr15	65253099	65291883
PARP16_chr15_65253099_65291883	0/0	t0008	1766	1	1	0	0	0	0	copy fasta	PARP16	chr15	65253099	65291883
PARP16_chr15_65253099_65291883	0/0	t0009	1766	1	1	0	0	0	0	copy fasta	PARP16	chr15	65253099	65291883
PARP16_chr15_65253099_65291883	0/0	t0010	1766	1	0	0	0	0	1	copy fasta	PARP16	chr15	65253099	65291883
PARP16_chr15_65253099_65291883	0/0	t0011	1766	1	1	0	0	0	0	copy fasta	PARP16	chr15	65253099	65291883
PARP16_chr15_65253099_65291883	0/0	t0012	1766	1	0	0	1	0	0	copy fasta	PARP16	chr15	65253099	65291883
PARP16_chr15_65253099_65291883	0/0	t0013	1766	1	0	1	0	0	0	copy fasta	PARP16	chr15	65253099	65291883
PARP16_chr15_65253099_65291883	0/0	t0014	1766	1	1	0	0	0	0	copy fasta	PARP16	chr15	65253099	65291883
PARP16_chr15_65253099_65291883	0/0	t0015	1766	1	0	0	0	1	0	copy fasta	PARP16	chr15	65253099	65291883
PARP16_chr15_65253099_65291883	0/0	t0016	1766	1	0	0	1	0	0	copy fasta	PARP16	chr15	65253099	65291883
PARP16_chr15_65253099_65291883	0/0	t0017	1766	1	0	0	1	0	0	copy fasta	PARP16	chr15	65253099	65291883
PARP16_chr15_65253099_65291883	0/0	t0018	1766	1	0	0	0	0	1	copy fasta	PARP16	chr15	65253099	65291883
PARP16_chr15_65253099_65291883	0/0	t0019	1766	1	0	0	1	0	0	copy fasta	PARP16	chr15	65253099	65291883
PARP16_chr15_65253099_65291883	0/0	t0020	1766	1	1	0	0	0	0	copy fasta	PARP16	chr15	65253099	65291883
PARP1_chr1_226355691_226413093	1/1	t0001	934	191	64	28	62	9	26	copy fasta	PARP1	chr1	226355691	226413093
PARP1_chr1_226355691_226413093	0/0	t0002	934	77	0	11	58	3	5	copy fasta	PARP1	chr1	226355691	226413093
PARP1_chr1_226355691_226413093	0/0	t0003	934	44	2	14	16	4	8	copy fasta	PARP1	chr1	226355691	226413093
PARP1_chr1_226355691_226413093	0/0	t0004	934	22	0	0	17	0	5	copy fasta	PARP1	chr1	226355691	226413093
PARP1_chr1_226355691_226413093	0/0	t0005	934	14	0	12	2	0	0	copy fasta	PARP1	chr1	226355691	226413093
PARP1_chr1_226355691_226413093	0/0	t0006	934	4	3	1	0	0	0	copy fasta	PARP1	chr1	226355691	226413093