JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PARP1_chr1_226355691_226413093	0/0	t0007	934	2	2	0	0	0	0	copy fasta	PARP1	chr1	226355691	226413093
PARP1_chr1_226355691_226413093	0/0	t0008	934	2	2	0	0	0	0	copy fasta	PARP1	chr1	226355691	226413093
PARP1_chr1_226355691_226413093	0/0	t0009	934	1	0	0	1	0	0	copy fasta	PARP1	chr1	226355691	226413093
PARP1_chr1_226355691_226413093	0/0	t0010	934	1	1	0	0	0	0	copy fasta	PARP1	chr1	226355691	226413093
PARP2_chr14_20338635_20362904	1/1	t0001	115	317	92	56	133	7	27	copy fasta	PARP2	chr14	20338635	20362904
PARP2_chr14_20338635_20362904	0/0	t0002	115	101	4	16	61	5	15	copy fasta	PARP2	chr14	20338635	20362904
PARP2_chr14_20338635_20362904	0/0	t0003	115	2	0	0	2	0	0	copy fasta	PARP2	chr14	20338635	20362904
PARP3_chr3_51937363_51953867	1/1	t0001	736	374	83	74	173	8	34	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	t0002	736	2	0	2	0	0	0	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	t0003	736	1	0	0	1	0	0	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	t0004	736	1	1	0	0	0	0	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	t0005	736	1	1	0	0	0	0	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	t0006	736	1	1	0	0	0	0	copy fasta	PARP3	chr3	51937363	51953867
PARP4_chr13_24415931_24517778	1/1	t0001	262	347	93	69	138	16	29	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	t0002	258	8	7	1	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	t0003	262	6	0	0	5	0	1	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	t0004	262	1	0	0	1	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP6_chr15_72236181_72277554	1/1	t0001	896	380	89	70	183	8	28	copy fasta	PARP6	chr15	72236181	72277554
PARP6_chr15_72236181_72277554	0/0	t0002	897	4	4	0	0	0	0	copy fasta	PARP6	chr15	72236181	72277554
PARP6_chr15_72236181_72277554	0/0	t0003	894	4	2	2	0	0	0	copy fasta	PARP6	chr15	72236181	72277554
PARP6_chr15_72236181_72277554	0/0	t0004	897	3	3	0	0	0	0	copy fasta	PARP6	chr15	72236181	72277554
PARP6_chr15_72236181_72277554	0/0	t0005	896	1	0	0	1	0	0	copy fasta	PARP6	chr15	72236181	72277554
PARP6_chr15_72236181_72277554	0/0	t0006	896	1	0	0	1	0	0	copy fasta	PARP6	chr15	72236181	72277554
PARP6_chr15_72236181_72277554	0/0	t0007	896	1	0	0	1	0	0	copy fasta	PARP6	chr15	72236181	72277554
PARP6_chr15_72236181_72277554	0/0	t0008	896	1	0	0	1	0	0	copy fasta	PARP6	chr15	72236181	72277554
PARP6_chr15_72236181_72277554	0/0	t0009	896	1	0	0	1	0	0	copy fasta	PARP6	chr15	72236181	72277554
PARP8_chr5_50661637_50851519	0/1	t0001	4915	80	5	14	48	3	9	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0002	4915	56	19	12	19	0	6	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0003	4915	49	1	9	27	3	9	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0004	4912	24	5	9	1	2	7	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0005	4915	24	14	1	9	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0006	4917	16	14	2	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0007	4915	8	2	4	0	0	2	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0008	4915	8	8	0	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0009	4915	6	0	0	6	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0010	4917	5	1	2	0	0	2	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0011	4915	3	3	0	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0012	4915	3	0	0	0	0	3	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0013	4918	2	2	0	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0014	4916	2	0	0	1	0	1	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0015	4915	2	0	0	2	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0016	4915	2	0	0	2	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0017	4915	2	2	0	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0018	4916	2	0	0	2	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0019	4917	2	2	0	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	1/0	t0020	4911	1	0	0	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0021	4913	1	0	0	1	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0022	4912	1	0	1	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0023	4912	1	1	0	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0024	4912	1	0	0	1	0	0	copy fasta	PARP8	chr5	50661637	50851519