JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PARP8_chr5_50661637_50851519	0/0	t0025	4912	1	1	0	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0026	4916	1	0	1	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0027	4916	1	0	0	1	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0028	4927	1	1	0	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0029	4915	1	1	0	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0030	4915	1	1	0	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0031	4915	1	1	0	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0032	4917	1	1	0	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0033	4915	1	1	0	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0034	4915	1	1	0	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0035	4915	1	0	0	1	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0036	4915	1	0	1	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0037	4915	1	1	0	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0038	4915	1	1	0	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0039	4915	1	1	0	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0040	4915	1	0	0	0	0	1	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0041	4915	1	0	0	1	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0042	4915	1	1	0	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0043	4915	1	0	0	1	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0044	4902	1	0	0	1	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0045	4915	1	0	0	1	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0046	4915	1	0	0	1	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0047	4915	1	0	0	0	0	1	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0048	4915	1	0	0	1	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0049	4916	1	1	0	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0050	4915	1	0	0	1	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	t0051	4915	1	0	0	0	0	1	copy fasta	PARP8	chr5	50661637	50851519
PARP9_chr3_122522924_122569300	1/0	t0001	586	333	78	68	140	12	34	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/1	t0002	586	84	7	8	57	4	7	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/0	t0003	586	12	11	1	0	0	0	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/0	t0004	586	2	0	0	0	0	2	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/0	t0005	586	2	1	1	0	0	0	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/0	t0006	586	1	1	0	0	0	0	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/0	t0007	586	1	0	0	0	0	1	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/0	t0008	586	1	0	0	1	0	0	copy fasta	PARP9	chr3	122522924	122569300
PARPBP_chr12_102115183_102202520	1/1	t0001	1337	321	77	55	157	7	23	copy fasta	PARPBP	chr12	102115183	102202520
PARPBP_chr12_102115183_102202520	0/0	t0002	1337	8	6	1	0	1	0	copy fasta	PARPBP	chr12	102115183	102202520
PARPBP_chr12_102115183_102202520	0/0	t0003	1337	7	7	0	0	0	0	copy fasta	PARPBP	chr12	102115183	102202520
PARPBP_chr12_102115183_102202520	0/0	t0004	1337	3	3	0	0	0	0	copy fasta	PARPBP	chr12	102115183	102202520
PARPBP_chr12_102115183_102202520	0/0	t0005	1337	1	0	0	0	0	1	copy fasta	PARPBP	chr12	102115183	102202520
PARPBP_chr12_102115183_102202520	0/0	t0006	1337	1	0	0	0	0	1	copy fasta	PARPBP	chr12	102115183	102202520
PARPBP_chr12_102115183_102202520	0/0	t0007	1337	1	0	0	0	0	1	copy fasta	PARPBP	chr12	102115183	102202520
PARPBP_chr12_102115183_102202520	0/0	t0008	1337	1	0	0	1	0	0	copy fasta	PARPBP	chr12	102115183	102202520
PARPBP_chr12_102115183_102202520	0/0	t0009	1337	1	1	0	0	0	0	copy fasta	PARPBP	chr12	102115183	102202520
PARS2_chr1_54751898_54769523	1/1	t0001	929	216	63	51	62	14	24	copy fasta	PARS2	chr1	54751898	54769523
PARS2_chr1_54751898_54769523	0/0	t0002	929	107	17	17	63	4	6	copy fasta	PARS2	chr1	54751898	54769523
PARS2_chr1_54751898_54769523	0/0	t0003	929	43	1	0	35	0	7	copy fasta	PARS2	chr1	54751898	54769523
PARS2_chr1_54751898_54769523	0/0	t0004	929	35	0	0	31	0	4	copy fasta	PARS2	chr1	54751898	54769523
PARS2_chr1_54751898_54769523	0/0	t0005	929	4	1	0	3	0	0	copy fasta	PARS2	chr1	54751898	54769523
PARS2_chr1_54751898_54769523	0/0	t0006	929	3	3	0	0	0	0	copy fasta	PARS2	chr1	54751898	54769523