JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PARS2_chr1_54751898_54769523	0/0	t0007	929	2	0	2	0	0	0	copy fasta	PARS2	chr1	54751898	54769523
PARS2_chr1_54751898_54769523	0/0	t0008	929	1	1	0	0	0	0	copy fasta	PARS2	chr1	54751898	54769523
PARS2_chr1_54751898_54769523	0/0	t0009	929	1	0	0	0	0	1	copy fasta	PARS2	chr1	54751898	54769523
PARVA_chr11_12372571_12540356	0/0	t0001	7513	25	0	6	15	0	4	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0002	7519	20	1	7	7	3	2	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0003	7513	19	1	4	7	0	7	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0004	7512	17	9	2	5	0	1	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0005	7519	12	0	0	12	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0006	7509	12	0	2	8	1	1	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/1	t0007	7509	10	0	4	0	1	4	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0008	7519	9	9	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0009	7512	8	6	2	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	1/0	t0010	7509	5	3	1	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0011	7513	4	0	0	4	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0012	7519	4	4	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0013	7515	4	4	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0014	7516	4	0	1	0	0	3	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0015	7513	4	0	4	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0016	7512	4	1	0	3	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0017	7509	4	0	3	0	1	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0018	7513	3	3	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0019	7510	3	0	0	3	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0020	7520	3	2	1	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0021	7515	3	3	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0022	7512	3	0	0	3	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0023	7516	3	3	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0024	7516	3	1	1	0	1	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0025	7513	3	0	0	3	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0026	7516	3	0	1	2	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0027	7516	3	0	0	3	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0028	7512	3	3	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0029	7512	3	1	0	1	0	1	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0030	7518	3	3	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0031	7519	2	2	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0032	7509	2	2	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0033	7512	2	2	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0034	7519	2	0	0	2	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0035	7513	2	0	0	2	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0036	7519	2	2	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0037	7519	2	0	0	2	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0038	7509	2	0	0	2	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0039	7509	2	0	2	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0040	7509	2	0	0	0	0	2	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0041	7509	2	0	2	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0042	7516	1	1	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0043	7516	1	1	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0044	7513	1	0	1	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0045	7516	1	0	0	1	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0046	7516	1	0	0	1	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0047	7513	1	0	1	0	0	0	copy fasta	PARVA	chr11	12372571	12540356