JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PARVA_chr11_12372571_12540356	0/0	t0048	7510	1	0	0	1	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0049	7516	1	1	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0050	7509	1	1	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0051	7523	1	1	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0052	7519	1	1	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0053	7515	1	1	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0054	7512	1	1	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0055	7509	1	0	1	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0056	7512	1	1	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0057	7515	1	1	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0058	7512	1	1	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0059	7519	1	1	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0060	7519	1	1	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0061	7516	1	1	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0062	7516	1	1	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0063	7519	1	1	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0064	7522	1	0	1	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0065	7513	1	0	0	1	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0066	7522	1	0	0	1	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0067	7519	1	1	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0068	7519	1	0	0	1	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0069	7516	1	1	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0070	7519	1	0	0	0	1	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0071	7519	1	0	0	1	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0072	7513	1	0	0	0	1	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0073	7513	1	0	0	0	1	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0074	7519	1	0	0	0	0	1	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0075	7519	1	1	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0076	7513	1	0	0	1	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0077	7516	1	0	0	1	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0078	7513	1	0	0	1	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0079	7519	1	0	0	0	0	1	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0080	7516	1	0	1	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0081	7516	1	0	0	1	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0082	7516	1	0	0	1	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0083	7513	1	0	0	1	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0084	7513	1	0	0	0	0	1	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0085	7516	1	0	1	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0086	7519	1	0	0	0	0	1	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0087	7513	1	0	1	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0088	7519	1	1	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0089	7516	1	0	0	1	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0090	7519	1	1	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0091	7522	1	1	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0092	7519	1	1	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0093	7516	1	0	1	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0094	7518	1	1	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0095	7515	1	0	0	1	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0096	7512	1	1	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0097	7509	1	0	1	0	0	0	copy fasta	PARVA	chr11	12372571	12540356