JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PARVA_chr11_12372571_12540356	0/0	t0098	7509	1	0	0	0	0	1	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0099	7509	1	0	0	1	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0100	7516	1	0	0	1	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	t0101	7519	1	0	0	1	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVB_chr22_44019302_44177939	1/0	t0001	4300	78	6	7	48	1	15	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0002	4302	28	3	13	12	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0003	4304	22	4	6	1	5	6	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/1	t0004	4301	21	1	9	5	0	5	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0005	4305	15	2	2	6	3	2	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0006	4299	12	4	8	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0007	4305	11	0	0	11	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0008	4299	9	0	0	8	1	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0009	4305	9	7	2	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0010	3223	7	7	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0011	4301	6	1	0	4	0	1	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0012	4301	6	1	3	0	0	2	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0013	4294	6	5	1	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0014	4300	5	3	0	0	1	1	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0015	3224	4	2	2	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0016	4305	4	4	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0017	4302	4	0	0	0	0	4	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0018	4300	3	0	0	1	2	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0019	4305	3	3	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0020	4301	3	0	0	3	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0021	4302	3	2	1	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0022	4305	2	0	2	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0023	4306	2	0	1	1	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0024	4299	2	0	0	2	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0025	4299	2	2	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0026	4305	2	0	0	2	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0027	4301	2	0	2	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0028	4300	2	0	0	0	0	2	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0029	4302	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0030	4302	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0031	4301	1	0	0	1	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0032	4301	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0033	3218	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0034	3223	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0035	3222	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0036	3224	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0037	4300	1	0	0	0	0	1	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0038	4305	1	0	0	1	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0039	4304	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0040	4305	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0041	4305	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0042	4305	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0043	4301	1	0	0	1	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0044	4301	1	0	0	0	0	1	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0045	4303	1	0	1	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0046	4305	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939