JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PARVB_chr22_44019302_44177939	0/0	t0047	4301	1	0	0	1	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0048	4305	1	0	0	1	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0049	4301	1	0	1	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0050	4300	1	0	1	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0051	4307	1	0	0	1	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0052	4302	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0053	4302	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0054	4303	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0055	4302	1	0	1	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0056	4304	1	0	0	0	0	1	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0057	4304	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0058	4305	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0059	4300	1	0	0	1	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0060	4301	1	0	0	0	1	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0061	4301	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0062	4300	1	0	0	1	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0063	4300	1	0	0	1	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0064	4300	1	0	0	1	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0065	4300	1	0	0	0	0	1	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0066	4300	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0067	4297	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0068	4298	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0069	4300	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0070	4300	1	0	1	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0071	4300	1	0	0	0	1	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0072	4294	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0073	4297	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0074	4302	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0075	4303	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0076	4303	1	0	0	1	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0077	4301	1	0	0	1	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0078	4304	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0079	4304	1	0	0	0	1	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0080	4300	1	0	0	0	0	1	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0081	4300	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0082	4304	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0083	4301	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0084	4301	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0085	4304	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0086	4301	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	t0087	4299	1	0	0	0	0	1	copy fasta	PARVB	chr22	44019302	44177939
PARVG_chr22_44175925_44213469	1/0	t0001	2493	104	15	19	52	4	13	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0002	2493	99	30	8	43	5	13	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/1	t0003	2493	69	21	23	19	0	5	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0004	2474	42	3	8	22	3	6	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0005	2493	28	0	2	25	0	1	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0006	2474	12	0	1	10	1	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0007	2493	10	5	1	4	0	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0008	2493	5	1	3	0	1	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0009	2493	5	1	3	0	0	1	copy fasta	PARVG	chr22	44175925	44213469