JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PARVG_chr22_44175925_44213469	0/0	t0010	2493	5	4	1	0	0	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0011	2493	4	0	1	0	3	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0012	2493	4	1	1	1	0	1	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0013	2493	3	0	1	0	0	2	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0014	2493	3	2	1	0	0	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0015	2493	2	0	0	0	0	2	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0016	2419	2	2	0	0	0	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0017	2493	2	0	0	2	0	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0018	2419	2	2	0	0	0	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0019	2493	2	2	0	0	0	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0020	2493	2	0	0	2	0	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0021	2493	1	1	0	0	0	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0022	2493	1	0	0	1	0	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0023	2474	1	0	0	1	0	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0024	2493	1	0	0	0	0	1	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0025	2474	1	0	0	0	1	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0026	2493	1	1	0	0	0	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0027	2419	1	1	0	0	0	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0028	2474	1	0	0	0	0	1	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0029	2493	1	1	0	0	0	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0030	2493	1	1	0	0	0	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0031	2493	1	0	0	1	0	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0032	2474	1	0	0	1	0	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0033	2493	1	1	0	0	0	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0034	2493	1	0	0	1	0	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0035	2474	1	1	0	0	0	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0036	2474	1	0	1	0	0	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	t0037	2509	1	0	0	1	0	0	copy fasta	PARVG	chr22	44175925	44213469
PASD1_chrX_151558675_151681739	0/0	t0001	785	94	6	14	59	2	13	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	1/0	t0002	789	58	38	12	3	3	1	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	t0003	789	33	6	13	7	1	6	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	t0004	789	9	9	0	0	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	t0005	789	7	5	2	0	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/1	t0006	789	6	0	5	0	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	t0007	789	4	4	0	0	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	t0008	789	2	2	0	0	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	t0009	790	1	1	0	0	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	t0010	789	1	1	0	0	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	t0011	785	1	1	0	0	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	t0012	789	1	0	0	0	0	1	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	t0013	786	1	0	0	1	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	t0014	789	1	1	0	0	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	t0015	785	1	0	0	1	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	t0016	785	1	0	0	0	0	1	copy fasta	PASD1	chrX	151558675	151681739
PASK_chr2_241101099_241154472	1/0	t0001	569	203	50	35	94	7	16	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/1	t0002	569	133	12	25	72	3	20	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	t0003	569	10	9	1	0	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	t0004	569	5	5	0	0	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	t0005	569	4	0	0	0	0	4	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	t0006	564	3	3	0	0	0	0	copy fasta	PASK	chr2	241101099	241154472