JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PASK_chr2_241101099_241154472	0/0	t0007	569	3	1	2	0	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	t0008	564	3	3	0	0	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	t0009	569	2	2	0	0	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	t0010	569	2	2	0	0	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	t0011	569	2	0	0	0	2	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	t0012	569	2	0	0	0	0	2	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	t0013	564	1	1	0	0	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	t0014	569	1	1	0	0	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	t0015	569	1	0	1	0	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	t0016	569	1	1	0	0	0	0	copy fasta	PASK	chr2	241101099	241154472
PATE1_chr11_125741279_125754867	0/0	t0001	1161	109	24	24	47	2	12	copy fasta	PATE1	chr11	125741279	125754867
PATE1_chr11_125741279_125754867	0/1	t0002	1156	104	42	17	33	3	8	copy fasta	PATE1	chr11	125741279	125754867
PATE1_chr11_125741279_125754867	0/0	t0003	1156	66	7	14	45	0	0	copy fasta	PATE1	chr11	125741279	125754867
PATE1_chr11_125741279_125754867	0/0	t0004	1158	63	2	2	45	2	12	copy fasta	PATE1	chr11	125741279	125754867
PATE1_chr11_125741279_125754867	1/0	t0005	1161	63	4	13	36	1	8	copy fasta	PATE1	chr11	125741279	125754867
PATE1_chr11_125741279_125754867	0/0	t0006	1160	10	6	0	4	0	0	copy fasta	PATE1	chr11	125741279	125754867
PATE1_chr11_125741279_125754867	0/0	t0007	1161	5	0	3	0	2	0	copy fasta	PATE1	chr11	125741279	125754867
PATE1_chr11_125741279_125754867	0/0	t0008	1156	3	3	0	0	0	0	copy fasta	PATE1	chr11	125741279	125754867
PATE1_chr11_125741279_125754867	0/0	t0009	1155	3	0	0	3	0	0	copy fasta	PATE1	chr11	125741279	125754867
PATE1_chr11_125741279_125754867	0/0	t0010	1163	2	2	0	0	0	0	copy fasta	PATE1	chr11	125741279	125754867
PATE1_chr11_125741279_125754867	0/0	t0011	1163	1	0	0	1	0	0	copy fasta	PATE1	chr11	125741279	125754867
PATE1_chr11_125741279_125754867	0/0	t0012	1158	1	1	0	0	0	0	copy fasta	PATE1	chr11	125741279	125754867
PATE1_chr11_125741279_125754867	0/0	t0013	1158	1	0	0	1	0	0	copy fasta	PATE1	chr11	125741279	125754867
PATE1_chr11_125741279_125754867	0/0	t0014	1161	1	0	0	1	0	0	copy fasta	PATE1	chr11	125741279	125754867
PATE1_chr11_125741279_125754867	0/0	t0015	1161	1	0	1	0	0	0	copy fasta	PATE1	chr11	125741279	125754867
PATE1_chr11_125741279_125754867	0/0	t0016	1156	1	1	0	0	0	0	copy fasta	PATE1	chr11	125741279	125754867
PATE2_chr11_125771113_125783828	0/0	t0001	1324	134	19	26	70	4	15	copy fasta	PATE2	chr11	125771113	125783828
PATE2_chr11_125771113_125783828	0/0	t0002	1324	128	17	20	78	3	10	copy fasta	PATE2	chr11	125771113	125783828
PATE2_chr11_125771113_125783828	0/1	t0003	1324	106	29	12	55	2	7	copy fasta	PATE2	chr11	125771113	125783828
PATE2_chr11_125771113_125783828	0/0	t0004	1325	22	11	6	0	1	4	copy fasta	PATE2	chr11	125771113	125783828
PATE2_chr11_125771113_125783828	1/0	t0005	1325	8	1	3	0	2	1	copy fasta	PATE2	chr11	125771113	125783828
PATE2_chr11_125771113_125783828	0/0	t0006	1324	4	4	0	0	0	0	copy fasta	PATE2	chr11	125771113	125783828
PATE2_chr11_125771113_125783828	0/0	t0007	1325	3	3	0	0	0	0	copy fasta	PATE2	chr11	125771113	125783828
PATE2_chr11_125771113_125783828	0/0	t0008	1325	3	3	0	0	0	0	copy fasta	PATE2	chr11	125771113	125783828
PATE2_chr11_125771113_125783828	0/0	t0009	1325	2	0	0	2	0	0	copy fasta	PATE2	chr11	125771113	125783828
PATE2_chr11_125771113_125783828	0/0	t0010	1324	2	1	1	0	0	0	copy fasta	PATE2	chr11	125771113	125783828
PATE2_chr11_125771113_125783828	0/0	t0011	1324	1	1	0	0	0	0	copy fasta	PATE2	chr11	125771113	125783828
PATE2_chr11_125771113_125783828	0/0	t0012	1325	1	0	0	0	0	1	copy fasta	PATE2	chr11	125771113	125783828
PATE2_chr11_125771113_125783828	0/0	t0013	1324	1	1	0	0	0	0	copy fasta	PATE2	chr11	125771113	125783828
PATE2_chr11_125771113_125783828	0/0	t0014	1324	1	0	0	1	0	0	copy fasta	PATE2	chr11	125771113	125783828
PATE3_chr11_125783127_125796600	0/1	t0001	1024	327	62	52	179	7	26	copy fasta	PATE3	chr11	125783127	125796600
PATE3_chr11_125783127_125796600	1/0	t0002	1024	38	20	9	0	3	5	copy fasta	PATE3	chr11	125783127	125796600
PATE3_chr11_125783127_125796600	0/0	t0003	1024	24	0	0	24	0	0	copy fasta	PATE3	chr11	125783127	125796600
PATE3_chr11_125783127_125796600	0/0	t0004	1024	11	1	5	0	1	4	copy fasta	PATE3	chr11	125783127	125796600
PATE3_chr11_125783127_125796600	0/0	t0005	1024	10	0	2	1	1	6	copy fasta	PATE3	chr11	125783127	125796600
PATE3_chr11_125783127_125796600	0/0	t0006	1024	6	0	0	6	0	0	copy fasta	PATE3	chr11	125783127	125796600
PATE3_chr11_125783127_125796600	0/0	t0007	1024	5	4	0	0	0	1	copy fasta	PATE3	chr11	125783127	125796600
PATE3_chr11_125783127_125796600	0/0	t0008	1024	4	4	0	0	0	0	copy fasta	PATE3	chr11	125783127	125796600
PATE3_chr11_125783127_125796600	0/0	t0009	1024	2	0	0	2	0	0	copy fasta	PATE3	chr11	125783127	125796600
PATE3_chr11_125783127_125796600	0/0	t0010	1024	1	1	0	0	0	0	copy fasta	PATE3	chr11	125783127	125796600