JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PATE4_chr11_125828316_125845072	0/0	t0001	1690	262	45	51	129	6	31	copy fasta	PATE4	chr11	125828316	125845072
PATE4_chr11_125828316_125845072	0/1	t0002	1690	53	19	8	20	2	3	copy fasta	PATE4	chr11	125828316	125845072
PATE4_chr11_125828316_125845072	0/0	t0003	1690	33	8	0	25	0	0	copy fasta	PATE4	chr11	125828316	125845072
PATE4_chr11_125828316_125845072	0/0	t0004	1690	30	20	5	0	1	4	copy fasta	PATE4	chr11	125828316	125845072
PATE4_chr11_125828316_125845072	0/0	t0005	1690	15	0	0	14	0	1	copy fasta	PATE4	chr11	125828316	125845072
PATE4_chr11_125828316_125845072	1/0	t0006	1690	8	1	3	0	2	1	copy fasta	PATE4	chr11	125828316	125845072
PATE4_chr11_125828316_125845072	0/0	t0007	1690	4	0	0	4	0	0	copy fasta	PATE4	chr11	125828316	125845072
PATE4_chr11_125828316_125845072	0/0	t0008	1690	3	0	3	0	0	0	copy fasta	PATE4	chr11	125828316	125845072
PATE4_chr11_125828316_125845072	0/0	t0009	1690	3	1	0	0	1	1	copy fasta	PATE4	chr11	125828316	125845072
PATE4_chr11_125828316_125845072	0/0	t0010	1690	2	0	0	2	0	0	copy fasta	PATE4	chr11	125828316	125845072
PATE4_chr11_125828316_125845072	0/0	t0011	1690	2	2	0	0	0	0	copy fasta	PATE4	chr11	125828316	125845072
PATE4_chr11_125828316_125845072	0/0	t0012	1690	2	0	0	2	0	0	copy fasta	PATE4	chr11	125828316	125845072
PATE4_chr11_125828316_125845072	0/0	t0013	1690	2	0	0	0	0	2	copy fasta	PATE4	chr11	125828316	125845072
PATE4_chr11_125828316_125845072	0/0	t0014	1690	1	0	0	1	0	0	copy fasta	PATE4	chr11	125828316	125845072
PATE4_chr11_125828316_125845072	0/0	t0015	1690	1	0	1	0	0	0	copy fasta	PATE4	chr11	125828316	125845072
PATE4_chr11_125828316_125845072	0/0	t0016	1690	1	0	1	0	0	0	copy fasta	PATE4	chr11	125828316	125845072
PATE4_chr11_125828316_125845072	0/0	t0017	1690	1	0	0	0	0	1	copy fasta	PATE4	chr11	125828316	125845072
PATE4_chr11_125828316_125845072	0/0	t0018	1690	1	0	0	1	0	0	copy fasta	PATE4	chr11	125828316	125845072
PATJ_chr1_61737480_62168915	0/0	t0001	2966	31	16	5	7	0	3	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	1/1	t0002	2973	26	7	6	2	4	5	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0003	2969	20	3	9	0	1	7	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0004	2974	18	2	8	0	3	5	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0005	2970	8	8	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0006	2974	6	3	0	1	0	2	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0007	2966	3	2	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0008	2968	3	3	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0009	2973	3	1	0	1	0	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0010	2972	3	3	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0011	2974	3	0	0	3	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0012	2975	3	0	3	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0013	2969	2	1	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0014	2969	2	2	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0015	2966	2	0	2	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0016	2971	2	1	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0017	2973	2	1	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0018	2972	2	2	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0019	2966	2	1	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0020	2973	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0021	2965	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0022	2973	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0023	2975	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0024	2959	1	0	0	1	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0025	2962	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0026	2966	1	0	0	1	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0027	2967	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0028	2969	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0029	2973	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0030	2971	1	0	0	1	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0031	2974	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0032	2974	1	0	0	0	0	1	copy fasta	PATJ	chr1	61737480	62168915