JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PATJ_chr1_61737480_62168915	0/0	t0033	2975	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0034	2965	1	0	0	1	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0035	2966	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	t0036	2966	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATL1_chr11_59631716_59674037	1/1	t0001	1817	211	63	53	84	0	9	copy fasta	PATL1	chr11	59631716	59674037
PATL1_chr11_59631716_59674037	0/0	t0002	1817	29	1	2	22	0	4	copy fasta	PATL1	chr11	59631716	59674037
PATL1_chr11_59631716_59674037	0/0	t0003	1817	10	0	0	10	0	0	copy fasta	PATL1	chr11	59631716	59674037
PATL1_chr11_59631716_59674037	0/0	t0004	1817	9	3	2	3	0	1	copy fasta	PATL1	chr11	59631716	59674037
PATL1_chr11_59631716_59674037	0/0	t0005	1817	8	7	1	0	0	0	copy fasta	PATL1	chr11	59631716	59674037
PATL1_chr11_59631716_59674037	0/0	t0006	1817	1	1	0	0	0	0	copy fasta	PATL1	chr11	59631716	59674037
PATL1_chr11_59631716_59674037	0/0	t0007	1817	1	1	0	0	0	0	copy fasta	PATL1	chr11	59631716	59674037
PATL1_chr11_59631716_59674037	0/0	t0008	1817	1	1	0	0	0	0	copy fasta	PATL1	chr11	59631716	59674037
PATL1_chr11_59631716_59674037	0/0	t0009	1817	1	0	0	1	0	0	copy fasta	PATL1	chr11	59631716	59674037
PATL1_chr11_59631716_59674037	0/0	t0010	1817	1	1	0	0	0	0	copy fasta	PATL1	chr11	59631716	59674037
PATL1_chr11_59631716_59674037	0/0	t0011	1817	1	0	0	1	0	0	copy fasta	PATL1	chr11	59631716	59674037
PATL1_chr11_59631716_59674037	0/0	t0012	1817	1	0	0	1	0	0	copy fasta	PATL1	chr11	59631716	59674037
PATL1_chr11_59631716_59674037	0/0	t0013	1817	1	1	0	0	0	0	copy fasta	PATL1	chr11	59631716	59674037
PATL1_chr11_59631716_59674037	0/0	t0014	1817	1	1	0	0	0	0	copy fasta	PATL1	chr11	59631716	59674037
PATL2_chr15_44660732_44716323	0/1	t0001	779	183	43	31	78	8	22	copy fasta	PATL2	chr15	44660732	44716323
PATL2_chr15_44660732_44716323	1/0	t0002	779	42	26	6	5	0	4	copy fasta	PATL2	chr15	44660732	44716323
PATL2_chr15_44660732_44716323	0/0	t0003	779	19	4	3	10	0	2	copy fasta	PATL2	chr15	44660732	44716323
PATL2_chr15_44660732_44716323	0/0	t0004	779	15	2	0	11	0	2	copy fasta	PATL2	chr15	44660732	44716323
PATL2_chr15_44660732_44716323	0/0	t0005	779	2	0	0	0	2	0	copy fasta	PATL2	chr15	44660732	44716323
PATL2_chr15_44660732_44716323	0/0	t0006	779	1	1	0	0	0	0	copy fasta	PATL2	chr15	44660732	44716323
PATZ1_chr22_31320804_31351346	1/1	t0001	1832	193	65	54	34	12	26	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	t0002	1832	87	6	10	70	0	1	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	t0003	1832	78	0	0	68	0	10	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	t0004	1832	7	0	4	0	0	3	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	t0005	1832	4	3	1	0	0	0	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	t0006	1832	2	1	1	0	0	0	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	t0007	1832	2	2	0	0	0	0	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	t0008	1832	2	0	0	0	2	0	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	t0009	1832	2	2	0	0	0	0	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	t0010	1832	1	0	1	0	0	0	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	t0011	1832	1	0	0	0	0	1	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	t0012	1832	1	1	0	0	0	0	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	t0013	1832	1	1	0	0	0	0	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	t0014	1832	1	1	0	0	0	0	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	t0015	1832	1	0	0	0	0	1	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	t0016	1832	1	0	0	1	0	0	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	t0017	1832	1	0	1	0	0	0	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	t0018	1832	1	0	0	1	0	0	copy fasta	PATZ1	chr22	31320804	31351346
PAWR_chr12_79579879_79695964	0/0	t0001	7969	62	21	5	30	0	6	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/1	t0002	7965	58	1	15	34	1	6	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	1/0	t0003	7969	42	4	9	22	0	6	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0004	7969	30	9	6	11	1	3	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0005	7969	13	10	3	0	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0006	7968	6	1	3	2	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0007	7969	5	4	1	0	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0008	7969	5	0	0	5	0	0	copy fasta	PAWR	chr12	79579879	79695964