Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACACB_chr12_109111587_109273226	0/0	t0007	1970	7	0	0	7	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	t0008	1996	6	0	0	6	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	t0009	1994	6	6	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	t0010	1992	4	4	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	t0011	1994	4	1	2	1	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	t0012	1993	2	2	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	t0013	1994	2	1	1	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	t0014	1993	2	0	0	2	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	t0015	1993	2	2	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	t0016	1992	2	0	1	0	1	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	t0017	1994	1	1	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	t0018	1994	1	1	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	t0019	1993	1	1	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	t0020	1969	1	0	0	1	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	t0021	1995	1	0	0	1	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	t0022	1992	1	1	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	t0023	1993	1	1	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	t0024	1992	1	1	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	t0025	1994	1	1	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACAD10_chr12_111681053_111762099	1/1	t0001	827	226	60	41	83	6	34	copy fasta	ACAD10	chr12	111681053	111762099
ACAD10_chr12_111681053_111762099	0/0	t0002	827	99	16	11	69	0	3	copy fasta	ACAD10	chr12	111681053	111762099
ACAD10_chr12_111681053_111762099	0/0	t0003	827	8	7	1	0	0	0	copy fasta	ACAD10	chr12	111681053	111762099
ACAD10_chr12_111681053_111762099	0/0	t0004	827	1	0	0	0	0	1	copy fasta	ACAD10	chr12	111681053	111762099
ACAD10_chr12_111681053_111762099	0/0	t0005	827	1	1	0	0	0	0	copy fasta	ACAD10	chr12	111681053	111762099
ACAD10_chr12_111681053_111762099	0/0	t0006	827	1	0	1	0	0	0	copy fasta	ACAD10	chr12	111681053	111762099
ACAD11_chr3_132553141_132664809	1/1	t0001	889	298	87	44	130	12	23	copy fasta	ACAD11	chr3	132553141	132664809
ACAD11_chr3_132553141_132664809	0/0	t0002	889	16	2	2	9	0	3	copy fasta	ACAD11	chr3	132553141	132664809
ACAD11_chr3_132553141_132664809	0/0	t0003	889	1	0	0	1	0	0	copy fasta	ACAD11	chr3	132553141	132664809
ACAD11_chr3_132553141_132664809	0/0	t0004	889	1	1	0	0	0	0	copy fasta	ACAD11	chr3	132553141	132664809
ACAD8_chr11_134248568_134270855	0/0	t0001	929	418	71	81	208	16	42	copy fasta	ACAD8	chr11	134248568	134270855
ACAD8_chr11_134248568_134270855	0/0	t0002	929	16	16	0	0	0	0	copy fasta	ACAD8	chr11	134248568	134270855
ACAD8_chr11_134248568_134270855	0/0	t0003	929	4	4	0	0	0	0	copy fasta	ACAD8	chr11	134248568	134270855
ACAD8_chr11_134248568_134270855	0/0	t0004	929	4	4	0	0	0	0	copy fasta	ACAD8	chr11	134248568	134270855
ACAD8_chr11_134248568_134270855	0/0	t0005	929	4	0	0	4	0	0	copy fasta	ACAD8	chr11	134248568	134270855
ACAD8_chr11_134248568_134270855	0/0	t0006	929	1	0	1	0	0	0	copy fasta	ACAD8	chr11	134248568	134270855
ACAD8_chr11_134248568_134270855	0/0	t0007	929	1	1	0	0	0	0	copy fasta	ACAD8	chr11	134248568	134270855
ACAD9_chr3_128874620_128918114	1/1	t0001	580	150	16	34	65	10	23	copy fasta	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	0/0	t0002	578	144	27	28	74	6	9	copy fasta	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	0/0	t0003	578	35	29	5	0	0	1	copy fasta	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	0/0	t0004	584	25	9	0	9	0	7	copy fasta	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	0/0	t0005	584	7	7	0	0	0	0	copy fasta	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	0/0	t0006	576	6	0	4	0	2	0	copy fasta	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	0/0	t0007	578	3	2	1	0	0	0	copy fasta	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	0/0	t0008	578	2	0	0	0	0	2	copy fasta	ACAD9	chr3	128874620	128918114
ACADL_chr2_210182923_210230447	1/1	t0001	1223	270	82	45	98	14	29	copy fasta	ACADL	chr2	210182923	210230447
ACADL_chr2_210182923_210230447	0/0	t0002	1223	2	2	0	0	0	0	copy fasta	ACADL	chr2	210182923	210230447
ACADL_chr2_210182923_210230447	0/0	t0003	1223	1	0	1	0	0	0	copy fasta	ACADL	chr2	210182923	210230447
ACADL_chr2_210182923_210230447	0/0	t0004	1223	1	0	0	0	0	1	copy fasta	ACADL	chr2	210182923	210230447
ACADM_chr1_75719709_75768679	0/0	t0001	996	168	56	27	62	6	17	copy fasta	ACADM	chr1	75719709	75768679
ACADM_chr1_75719709_75768679	1/1	t0002	996	141	25	25	70	6	13	copy fasta	ACADM	chr1	75719709	75768679