Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ASPH_chr8_61495556_61719592	0/0	t0006	3025	13	3	1	8	0	1	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	t0007	3025	9	9	0	0	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	t0008	3025	7	0	3	4	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	t0009	3029	5	5	0	0	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	t0010	3025	4	3	1	0	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	t0011	3021	4	2	0	2	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	t0012	3025	3	0	0	0	1	2	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	t0013	3025	3	0	0	3	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	t0014	3021	2	2	0	0	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	t0015	3025	2	0	2	0	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	t0016	3025	2	0	0	2	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	t0017	3025	2	0	1	0	0	1	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	t0018	3021	1	1	0	0	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	t0019	3025	1	1	0	0	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	t0020	3025	1	1	0	0	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	t0021	3029	1	1	0	0	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	t0022	3021	1	0	0	1	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	t0023	3021	1	1	0	0	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	t0024	3008	1	0	0	0	1	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	t0025	3028	1	1	0	0	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	t0026	3021	1	0	0	1	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	t0027	3008	1	0	1	0	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	t0028	3025	1	0	0	0	0	1	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	t0029	3025	1	0	0	1	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	t0030	3025	1	1	0	0	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	t0031	3025	1	1	0	0	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	t0032	3025	1	0	0	1	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	t0033	3021	1	0	0	1	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	t0034	3028	1	1	0	0	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPM_chr1_197079127_197151669	0/0	t0001	430	219	33	44	105	7	30	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	1/1	t0002	430	53	40	5	0	1	5	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	t0003	430	7	0	0	7	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	t0004	430	7	7	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	t0005	430	4	4	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	t0006	430	2	2	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	t0007	430	2	0	1	0	0	1	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	t0008	430	1	0	0	1	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	t0009	430	1	0	0	1	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPRV1_chr2_69955089_69966631	0/1	t0001	764	143	29	35	61	6	11	copy fasta	ASPRV1	chr2	69955089	69966631
ASPRV1_chr2_69955089_69966631	0/0	t0002	764	138	31	21	73	1	12	copy fasta	ASPRV1	chr2	69955089	69966631
ASPRV1_chr2_69955089_69966631	1/0	t0003	764	127	14	21	62	7	22	copy fasta	ASPRV1	chr2	69955089	69966631
ASPRV1_chr2_69955089_69966631	0/0	t0004	764	17	0	0	17	0	0	copy fasta	ASPRV1	chr2	69955089	69966631
ASPRV1_chr2_69955089_69966631	0/0	t0005	765	14	11	3	0	0	0	copy fasta	ASPRV1	chr2	69955089	69966631
ASPRV1_chr2_69955089_69966631	0/0	t0006	764	10	4	1	1	0	4	copy fasta	ASPRV1	chr2	69955089	69966631
ASPRV1_chr2_69955089_69966631	0/0	t0007	764	4	4	0	0	0	0	copy fasta	ASPRV1	chr2	69955089	69966631
ASPRV1_chr2_69955089_69966631	0/0	t0008	764	3	0	0	3	0	0	copy fasta	ASPRV1	chr2	69955089	69966631
ASPRV1_chr2_69955089_69966631	0/0	t0009	764	2	2	0	0	0	0	copy fasta	ASPRV1	chr2	69955089	69966631
ASPRV1_chr2_69955089_69966631	0/0	t0010	764	2	0	0	2	0	0	copy fasta	ASPRV1	chr2	69955089	69966631
ASPRV1_chr2_69955089_69966631	0/0	t0011	764	1	0	0	1	0	0	copy fasta	ASPRV1	chr2	69955089	69966631
ASPRV1_chr2_69955089_69966631	0/0	t0012	764	1	0	0	0	0	1	copy fasta	ASPRV1	chr2	69955089	69966631