JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAWR_chr12_79579879_79695964	0/0	t0009	7967	4	3	1	0	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0010	7969	3	0	0	3	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0011	7970	3	3	0	0	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0012	7970	2	0	0	1	0	1	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0013	7969	2	0	0	2	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0014	7969	1	0	0	1	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0015	7969	1	1	0	0	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0016	7969	1	1	0	0	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0017	7970	1	1	0	0	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0018	7969	1	1	0	0	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0019	7969	1	1	0	0	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0020	7969	1	0	0	1	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0021	7969	1	1	0	0	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0022	7969	1	1	0	0	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0023	7969	1	0	0	1	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0024	7970	1	0	0	0	0	1	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0025	7966	1	0	0	1	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0026	7966	1	0	0	1	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0027	7970	1	0	0	0	0	1	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0028	7969	1	0	0	0	0	1	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0029	7965	1	0	0	0	0	1	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0030	7965	1	0	1	0	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0031	7969	1	0	0	1	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0032	7969	1	1	0	0	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0033	7969	1	1	0	0	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	t0034	7969	1	1	0	0	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAX1_chr20_21700664_21723481	1/1	t0001	3969	179	43	42	58	11	23	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0002	3968	40	3	7	24	3	3	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0003	3969	32	7	2	20	0	3	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0004	3969	27	5	0	20	0	2	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0005	3970	15	2	1	10	0	2	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0006	3969	9	0	0	9	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0007	3968	9	0	0	9	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0008	3969	9	9	0	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0009	3969	7	7	0	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0010	3969	5	0	0	5	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0011	3970	5	0	1	0	2	2	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0012	3969	5	0	0	5	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0013	3970	4	2	0	0	1	1	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0014	3969	3	0	3	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0015	3970	3	2	1	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0016	3969	3	3	0	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0017	3973	2	2	0	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0018	3969	2	1	1	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0019	3967	2	0	0	2	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0020	3968	2	0	0	2	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0021	3969	2	0	0	0	0	2	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0022	3968	2	0	0	2	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0023	3968	2	0	0	1	0	1	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0024	3973	2	2	0	0	0	0	copy fasta	PAX1	chr20	21700664	21723481