JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAX1_chr20_21700664_21723481	0/0	t0025	3969	2	1	1	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0026	3969	2	2	0	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0027	3969	2	0	2	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0028	3969	1	0	0	1	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0029	3956	1	0	0	1	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0030	3969	1	1	0	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0031	3969	1	0	1	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0032	3969	1	1	0	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0033	3968	1	0	0	1	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0034	3968	1	0	1	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0035	3967	1	0	0	1	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0036	3968	1	0	0	0	0	1	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0037	3969	1	0	0	1	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0038	3969	1	0	1	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0039	3969	1	0	0	0	1	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0040	3969	1	0	1	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0041	3969	1	0	1	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0042	3968	1	0	0	1	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0043	3967	1	0	0	1	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0044	3968	1	1	0	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0045	3969	1	0	1	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0046	3969	1	1	0	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0047	3969	1	1	0	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0048	3969	1	1	0	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0049	3969	1	1	0	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	t0050	3969	1	0	1	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX2_chr10_100740582_100834944	0/0	t0001	3005	53	8	7	21	3	14	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0002	3005	23	1	9	6	2	5	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0003	3005	19	3	2	12	0	2	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	1/0	t0004	3005	12	4	5	0	1	1	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0005	3000	10	0	2	0	2	6	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0006	3005	10	9	0	0	0	1	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0007	3005	9	6	1	0	1	1	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0008	3005	9	8	1	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0009	3005	9	7	2	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0010	3005	6	3	3	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0011	3000	5	0	4	0	0	1	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0012	3005	4	0	2	0	0	2	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0013	3005	4	4	0	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0014	3006	4	4	0	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0015	3005	3	3	0	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0016	3006	3	2	1	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0017	3005	3	3	0	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0018	3005	3	0	3	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0019	3005	3	3	0	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0020	3005	3	3	0	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0021	3005	3	0	0	0	1	2	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0022	3005	2	0	0	2	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0023	3005	2	2	0	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0024	3008	2	2	0	0	0	0	copy fasta	PAX2	chr10	100740582	100834944