JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAX2_chr10_100740582_100834944	0/0	t0025	3005	2	2	0	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0026	3006	2	2	0	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0027	3005	1	0	0	0	0	1	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0028	3005	1	1	0	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0029	3000	1	0	0	0	0	1	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0030	3000	1	0	0	0	0	1	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0031	3005	1	1	0	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0032	3005	1	1	0	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0033	3005	1	1	0	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0034	3005	1	0	1	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0035	3005	1	1	0	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0036	3005	1	1	0	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0037	3000	1	0	1	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0038	3005	1	0	0	1	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/1	t0039	3000	1	0	0	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0040	3005	1	1	0	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0041	3005	1	1	0	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0042	3005	1	0	1	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0043	3005	1	0	1	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0044	3005	1	0	1	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0045	3005	1	1	0	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0046	3008	1	1	0	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0047	3005	1	0	1	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0048	3005	1	1	0	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0049	3005	1	1	0	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	t0050	3005	1	1	0	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX3_chr2_222194887_222303998	1/1	t0001	1905	123	46	29	20	14	12	copy fasta	PAX3	chr2	222194887	222303998
PAX3_chr2_222194887_222303998	0/0	t0002	1906	78	2	8	59	0	9	copy fasta	PAX3	chr2	222194887	222303998
PAX3_chr2_222194887_222303998	0/0	t0003	1905	64	1	10	44	1	8	copy fasta	PAX3	chr2	222194887	222303998
PAX3_chr2_222194887_222303998	0/0	t0004	1905	21	0	8	2	1	10	copy fasta	PAX3	chr2	222194887	222303998
PAX3_chr2_222194887_222303998	0/0	t0005	1906	19	18	1	0	0	0	copy fasta	PAX3	chr2	222194887	222303998
PAX3_chr2_222194887_222303998	0/0	t0006	1907	15	12	3	0	0	0	copy fasta	PAX3	chr2	222194887	222303998
PAX3_chr2_222194887_222303998	0/0	t0007	1907	2	2	0	0	0	0	copy fasta	PAX3	chr2	222194887	222303998
PAX3_chr2_222194887_222303998	0/0	t0008	1905	1	0	1	0	0	0	copy fasta	PAX3	chr2	222194887	222303998
PAX3_chr2_222194887_222303998	0/0	t0009	1905	1	0	0	0	0	1	copy fasta	PAX3	chr2	222194887	222303998
PAX3_chr2_222194887_222303998	0/0	t0010	1905	1	0	0	1	0	0	copy fasta	PAX3	chr2	222194887	222303998
PAX3_chr2_222194887_222303998	0/0	t0011	1905	1	1	0	0	0	0	copy fasta	PAX3	chr2	222194887	222303998
PAX3_chr2_222194887_222303998	0/0	t0012	1905	1	0	0	1	0	0	copy fasta	PAX3	chr2	222194887	222303998
PAX3_chr2_222194887_222303998	0/0	t0013	1905	1	0	0	1	0	0	copy fasta	PAX3	chr2	222194887	222303998
PAX4_chr7_127605292_127623142	1/0	t0001	1179	120	10	18	74	5	12	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	t0002	1185	75	19	12	27	2	15	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	t0003	1185	67	4	24	25	6	8	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	t0004	1183	28	7	4	8	4	5	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	t0005	1179	26	17	3	6	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	t0006	1179	22	0	0	22	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	t0007	1187	15	10	0	5	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	t0008	1181	14	5	1	8	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	t0009	1185	10	1	7	0	0	2	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/1	t0010	1185	8	1	4	2	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	t0011	1189	6	1	0	5	0	0	copy fasta	PAX4	chr7	127605292	127623142