JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAX4_chr7_127605292_127623142	0/0	t0012	1179	3	3	0	0	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	t0013	1181	3	3	0	0	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	t0014	1181	3	3	0	0	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	t0015	1189	3	2	0	0	0	1	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	t0016	1183	3	0	2	0	0	1	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	t0017	1181	3	1	1	1	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	t0018	1179	2	2	0	0	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	t0019	1181	2	1	0	1	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	t0020	1181	2	2	0	0	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	t0021	1179	2	2	0	0	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	t0022	1179	1	0	0	1	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	t0023	1179	1	0	0	1	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	t0024	1177	1	1	0	0	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	t0025	1179	1	1	0	0	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	t0026	1183	1	1	0	0	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	t0027	1185	1	1	0	0	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	t0028	1183	1	0	0	1	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	t0029	1179	1	0	0	0	1	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	t0030	1185	1	0	0	0	0	1	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	t0031	1185	1	0	0	1	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	t0032	1179	1	0	0	0	0	1	copy fasta	PAX4	chr7	127605292	127623142
PAX5_chr9_36828269_37039268	0/0	t0001	7532	49	6	8	27	1	7	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0002	7532	18	0	7	7	1	3	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0003	7533	12	2	3	6	1	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	1/0	t0004	7529	8	7	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0005	7523	7	0	4	2	0	1	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0006	7524	6	1	1	4	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0007	7532	6	6	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0008	7532	6	6	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0009	7523	6	6	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/1	t0010	7535	4	0	1	1	0	1	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0011	7533	4	0	1	1	0	2	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0012	7530	4	1	0	0	2	1	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0013	7528	4	1	0	2	1	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0014	7528	3	0	1	0	0	2	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0015	7523	3	2	1	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0016	7519	3	3	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0017	7527	3	3	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0018	7531	3	0	3	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0019	7530	3	0	0	3	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0020	7534	2	2	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0021	7534	2	0	0	1	0	1	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0022	7525	2	0	0	2	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0023	7535	2	1	1	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0024	7532	2	0	2	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0025	7523	2	2	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0026	7523	2	2	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0027	7523	2	2	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0028	7536	2	1	0	0	0	1	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0029	7526	2	0	1	0	1	0	copy fasta	PAX5	chr9	36828269	37039268