JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAX5_chr9_36828269_37039268	0/0	t0030	7532	2	0	2	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0031	7534	2	0	0	2	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0032	7526	2	0	0	2	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0033	7532	2	0	1	0	1	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0034	7532	2	0	0	2	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0035	7525	2	2	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0036	7531	2	1	1	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0037	7529	2	0	0	0	0	2	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0038	7531	2	0	0	2	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0039	7547	1	0	0	1	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0040	7544	1	0	0	1	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0041	7548	1	0	0	0	0	1	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0042	7546	1	0	1	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0043	7532	1	0	0	0	0	1	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0044	7542	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0045	7549	1	0	0	0	0	1	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0046	7545	1	0	0	1	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0047	7545	1	0	0	1	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0048	7536	1	0	0	1	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0049	7549	1	0	1	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0050	7549	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0051	7544	1	0	0	1	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0052	7544	1	0	0	1	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0053	7540	1	0	0	1	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0054	7546	1	0	0	1	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0055	7544	1	0	0	1	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0056	7537	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0057	7535	1	0	0	0	0	1	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0058	7548	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0059	7543	1	0	0	1	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0060	7534	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0061	7525	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0062	7531	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0063	7530	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0064	7536	1	0	1	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0065	7532	1	0	0	0	0	1	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0066	7531	1	0	0	1	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0067	7524	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0068	7533	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0069	7533	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0070	7530	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0071	7529	1	0	1	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0072	7528	1	0	0	0	1	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0073	7535	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0074	7531	1	0	1	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0075	7527	1	0	0	1	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0076	7526	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0077	7526	1	0	1	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0078	7523	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0079	7524	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268