JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAX5_chr9_36828269_37039268	0/0	t0080	7530	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0081	7524	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0082	7528	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0083	7533	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0084	7534	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0085	7534	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0086	7532	1	0	0	0	0	1	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0087	7523	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0088	7532	1	0	0	0	0	1	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0089	7534	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0090	7532	1	0	0	1	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0091	7532	1	0	0	0	0	1	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0092	7529	1	0	1	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0093	7525	1	0	0	0	1	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0094	7536	1	0	1	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0095	7536	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0096	7534	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0097	7530	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0098	7532	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0099	7525	1	0	0	1	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0100	7532	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0101	7532	1	0	0	1	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0102	7532	1	0	0	1	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0103	7532	1	0	1	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0104	7532	1	0	1	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0105	7525	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0106	7532	1	0	1	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0107	7536	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0108	7523	1	0	0	1	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0109	7525	1	0	0	1	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0110	7523	1	0	0	1	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0111	7532	1	0	1	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0112	7535	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0113	7533	1	0	0	0	0	1	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0114	7527	1	0	0	0	0	1	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0115	7525	1	0	1	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0116	7531	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0117	7529	1	0	0	1	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0118	7532	1	0	0	1	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0119	7520	1	0	1	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0120	7524	1	0	0	0	0	1	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0121	7533	1	0	0	1	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	t0122	7532	1	0	0	1	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX6_chr11_31784026_31816322	1/0	t0001	1433	259	41	43	136	8	30	copy fasta	PAX6	chr11	31784026	31816322
PAX6_chr11_31784026_31816322	0/1	t0002	1432	55	12	21	9	4	8	copy fasta	PAX6	chr11	31784026	31816322
PAX6_chr11_31784026_31816322	0/0	t0003	1434	37	21	1	11	0	4	copy fasta	PAX6	chr11	31784026	31816322
PAX6_chr11_31784026_31816322	0/0	t0004	1434	8	7	1	0	0	0	copy fasta	PAX6	chr11	31784026	31816322
PAX6_chr11_31784026_31816322	0/0	t0005	1432	7	3	2	2	0	0	copy fasta	PAX6	chr11	31784026	31816322
PAX6_chr11_31784026_31816322	0/0	t0006	1433	2	0	1	1	0	0	copy fasta	PAX6	chr11	31784026	31816322
PAX6_chr11_31784026_31816322	0/0	t0007	1433	1	1	0	0	0	0	copy fasta	PAX6	chr11	31784026	31816322