JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAX6_chr11_31784026_31816322	0/0	t0008	1433	1	0	0	1	0	0	copy fasta	PAX6	chr11	31784026	31816322
PAX6_chr11_31784026_31816322	0/0	t0009	1433	1	1	0	0	0	0	copy fasta	PAX6	chr11	31784026	31816322
PAX6_chr11_31784026_31816322	0/0	t0010	1433	1	1	0	0	0	0	copy fasta	PAX6	chr11	31784026	31816322
PAX6_chr11_31784026_31816322	0/0	t0011	1433	1	0	0	1	0	0	copy fasta	PAX6	chr11	31784026	31816322
PAX6_chr11_31784026_31816322	0/0	t0012	1433	1	0	0	1	0	0	copy fasta	PAX6	chr11	31784026	31816322
PAX6_chr11_31784026_31816322	0/0	t0013	1432	1	0	1	0	0	0	copy fasta	PAX6	chr11	31784026	31816322
PAX6_chr11_31784026_31816322	0/0	t0014	1433	1	1	0	0	0	0	copy fasta	PAX6	chr11	31784026	31816322
PAX7_chr1_18625846_18753866	1/1	t0001	4696	78	4	19	39	2	12	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0002	4696	64	6	16	26	3	13	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0003	4696	23	19	4	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0004	4696	12	4	2	6	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0005	4696	9	0	3	4	0	2	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0006	4696	9	0	1	7	0	1	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0007	4696	9	8	1	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0008	4696	8	0	3	5	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0009	4696	7	5	0	1	0	1	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0010	4696	6	2	1	1	0	2	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0011	4696	5	5	0	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0012	4696	5	3	2	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0013	4696	4	3	0	0	0	1	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0014	4696	4	0	4	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0015	4696	3	3	0	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0016	4695	3	3	0	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0017	4696	2	2	0	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0018	4696	2	0	0	2	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0019	4696	2	0	0	2	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0020	4696	2	1	1	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0021	4696	2	1	1	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0022	4696	2	0	0	1	0	1	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0023	4696	2	2	0	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0024	4696	1	1	0	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0025	4696	1	1	0	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0026	4696	1	1	0	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0027	4696	1	1	0	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0028	4695	1	1	0	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0029	4696	1	1	0	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0030	4696	1	0	0	1	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0031	4696	1	0	0	1	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0032	4695	1	1	0	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0033	4696	1	1	0	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0034	4696	1	0	0	1	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0035	4696	1	0	0	0	0	1	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0036	4696	1	1	0	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0037	4696	1	1	0	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0038	4696	1	0	1	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0039	4696	1	1	0	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0040	4696	1	1	0	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0041	4696	1	0	0	1	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0042	4696	1	0	0	1	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0043	4696	1	0	0	1	0	0	copy fasta	PAX7	chr1	18625846	18753866