JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAX7_chr1_18625846_18753866	0/0	t0044	4696	1	0	0	0	0	1	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0045	4696	1	1	0	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0046	4695	1	0	1	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0047	4695	1	0	1	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0048	4696	1	0	0	1	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0049	4696	1	0	0	1	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0050	4696	1	1	0	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0051	4696	1	0	1	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0052	4696	1	0	1	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0053	4696	1	0	0	1	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0054	4696	1	0	0	0	0	1	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0055	4696	1	0	0	1	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0056	4696	1	1	0	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0057	4696	1	0	1	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0058	4696	1	0	0	0	1	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0059	4696	1	0	0	1	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0060	4696	1	1	0	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0061	4696	1	0	0	1	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	t0062	4696	1	1	0	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX8_chr2_113210997_113283921	0/0	t0001	2703	91	15	15	48	2	11	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0002	2703	60	38	11	5	3	3	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0003	2703	45	1	4	35	2	3	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/1	t0004	2703	28	1	11	9	1	5	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0005	2703	10	0	5	5	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	1/0	t0006	2703	8	6	1	0	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0007	2703	8	1	1	4	0	2	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0008	2703	6	0	0	6	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0009	2703	5	4	1	0	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0010	2703	4	0	1	0	1	2	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0011	2703	2	2	0	0	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0012	2703	2	2	0	0	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0013	2703	2	2	0	0	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0014	2703	2	1	0	1	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0015	2703	2	1	0	1	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0016	2703	2	2	0	0	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0017	2703	2	2	0	0	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0018	2703	1	1	0	0	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0019	2703	1	1	0	0	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0020	2703	1	1	0	0	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0021	2703	1	1	0	0	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0022	2703	1	0	0	0	1	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0023	2703	1	1	0	0	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0024	2703	1	0	0	0	0	1	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0025	2703	1	1	0	0	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0026	2703	1	0	0	0	0	1	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0027	2703	1	1	0	0	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0028	2703	1	1	0	0	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0029	2703	1	0	1	0	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0030	2703	1	0	1	0	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0031	2703	1	0	1	0	0	0	copy fasta	PAX8	chr2	113210997	113283921