JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAX8_chr2_113210997_113283921	0/0	t0032	2703	1	1	0	0	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0033	2703	1	0	1	0	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0034	2703	1	0	0	1	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0035	2703	1	1	0	0	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0036	2703	1	1	0	0	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0037	2703	1	0	0	1	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	t0038	2703	1	1	0	0	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX9_chr14_36656860_36684362	0/0	t0001	3143	99	8	12	72	2	5	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	1/0	t0002	3141	94	18	19	29	11	16	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	t0003	3143	80	8	20	39	2	11	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	t0004	3141	69	8	4	54	0	3	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	t0005	3143	14	1	5	0	1	7	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	t0006	3143	14	10	4	0	0	0	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	t0007	3143	12	0	6	0	2	4	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	t0008	3143	10	9	1	0	0	0	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	t0009	3141	8	7	1	0	0	0	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	t0010	3143	8	8	0	0	0	0	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	t0011	3143	7	5	1	0	0	1	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	t0012	3137	5	0	0	5	0	0	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	t0013	3143	3	0	0	3	0	0	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	t0014	3143	2	0	1	1	0	0	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	t0015	3143	2	2	0	0	0	0	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	t0016	3143	2	2	0	0	0	0	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	t0017	3143	2	0	0	2	0	0	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	t0018	3141	2	2	0	0	0	0	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	t0019	3141	1	0	0	1	0	0	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	t0020	3141	1	1	0	0	0	0	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	t0021	3143	1	0	0	0	0	1	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	t0022	3143	1	0	1	0	0	0	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/1	t0023	3143	1	0	0	0	0	0	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	t0024	3143	1	1	0	0	0	0	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	t0025	3143	1	1	0	0	0	0	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	t0026	3143	1	0	0	1	0	0	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	t0027	3143	1	1	0	0	0	0	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	t0028	3141	1	0	0	1	0	0	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	t0029	3141	1	0	0	1	0	0	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	t0030	3143	1	0	1	0	0	0	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	t0031	3141	1	0	0	1	0	0	copy fasta	PAX9	chr14	36656860	36684362
PAXBP1_chr21_32728899_32776755	1/1	t0001	1139	351	89	51	156	12	41	copy fasta	PAXBP1	chr21	32728899	32776755
PAXBP1_chr21_32728899_32776755	0/0	t0002	1139	2	0	2	0	0	0	copy fasta	PAXBP1	chr21	32728899	32776755
PAXBP1_chr21_32728899_32776755	0/0	t0003	1139	2	2	0	0	0	0	copy fasta	PAXBP1	chr21	32728899	32776755
PAXBP1_chr21_32728899_32776755	0/0	t0004	1139	2	2	0	0	0	0	copy fasta	PAXBP1	chr21	32728899	32776755
PAXBP1_chr21_32728899_32776755	0/0	t0005	1139	1	0	1	0	0	0	copy fasta	PAXBP1	chr21	32728899	32776755
PAXBP1_chr21_32728899_32776755	0/0	t0006	1139	1	0	0	0	0	1	copy fasta	PAXBP1	chr21	32728899	32776755
PAXBP1_chr21_32728899_32776755	0/0	t0007	1139	1	1	0	0	0	0	copy fasta	PAXBP1	chr21	32728899	32776755
PAXIP1_chr7_154938690_155008124	1/1	t0001	655	319	59	52	160	9	37	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	t0002	661	13	1	4	7	1	0	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	t0003	655	11	9	2	0	0	0	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	t0004	655	8	8	0	0	0	0	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	t0005	656	4	1	2	0	0	1	copy fasta	PAXIP1	chr7	154938690	155008124