JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAXIP1_chr7_154938690_155008124	0/0	t0006	655	2	2	0	0	0	0	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	t0007	655	2	2	0	0	0	0	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	t0008	655	2	2	0	0	0	0	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	t0009	655	1	0	0	1	0	0	copy fasta	PAXIP1	chr7	154938690	155008124
PAXX_chr9_136987422_136998976	1/1	t0001	194	384	92	74	160	12	44	copy fasta	PAXX	chr9	136987422	136998976
PBDC1_chrX_76168062_76183314	1/1	t0001	484	286	71	45	126	11	31	copy fasta	PBDC1	chrX	76168062	76183314
PBDC1_chrX_76168062_76183314	0/0	t0002	484	4	0	0	4	0	0	copy fasta	PBDC1	chrX	76168062	76183314
PBDC1_chrX_76168062_76183314	0/0	t0003	434	1	0	1	0	0	0	copy fasta	PBDC1	chrX	76168062	76183314
PBDC1_chrX_76168062_76183314	0/0	t0004	484	1	1	0	0	0	0	copy fasta	PBDC1	chrX	76168062	76183314
PBDC1_chrX_76168062_76183314	0/0	t0005	484	1	1	0	0	0	0	copy fasta	PBDC1	chrX	76168062	76183314
PBK_chr8_27804624_27842817	1/1	t0001	868	215	50	32	97	7	27	copy fasta	PBK	chr8	27804624	27842817
PBK_chr8_27804624_27842817	0/0	t0002	871	113	32	12	61	1	7	copy fasta	PBK	chr8	27804624	27842817
PBK_chr8_27804624_27842817	0/0	t0003	868	31	0	22	1	2	6	copy fasta	PBK	chr8	27804624	27842817
PBK_chr8_27804624_27842817	0/0	t0004	871	16	0	0	14	0	2	copy fasta	PBK	chr8	27804624	27842817
PBK_chr8_27804624_27842817	0/0	t0005	871	4	0	0	4	0	0	copy fasta	PBK	chr8	27804624	27842817
PBK_chr8_27804624_27842817	0/0	t0006	868	4	4	0	0	0	0	copy fasta	PBK	chr8	27804624	27842817
PBK_chr8_27804624_27842817	0/0	t0007	868	3	3	0	0	0	0	copy fasta	PBK	chr8	27804624	27842817
PBK_chr8_27804624_27842817	0/0	t0008	868	3	3	0	0	0	0	copy fasta	PBK	chr8	27804624	27842817
PBK_chr8_27804624_27842817	0/0	t0009	871	2	2	0	0	0	0	copy fasta	PBK	chr8	27804624	27842817
PBK_chr8_27804624_27842817	0/0	t0010	868	1	0	0	1	0	0	copy fasta	PBK	chr8	27804624	27842817
PBLD_chr10_68277660_68337928	1/1	t0001	1722	220	52	40	94	11	21	copy fasta	PBLD	chr10	68277660	68337928
PBLD_chr10_68277660_68337928	0/0	t0002	1719	112	21	15	53	2	21	copy fasta	PBLD	chr10	68277660	68337928
PBLD_chr10_68277660_68337928	0/0	t0003	1719	12	9	3	0	0	0	copy fasta	PBLD	chr10	68277660	68337928
PBLD_chr10_68277660_68337928	0/0	t0004	1724	6	0	0	5	0	1	copy fasta	PBLD	chr10	68277660	68337928
PBLD_chr10_68277660_68337928	0/0	t0005	1722	4	0	0	4	0	0	copy fasta	PBLD	chr10	68277660	68337928
PBLD_chr10_68277660_68337928	0/0	t0006	1722	3	0	0	3	0	0	copy fasta	PBLD	chr10	68277660	68337928
PBLD_chr10_68277660_68337928	0/0	t0007	1722	1	1	0	0	0	0	copy fasta	PBLD	chr10	68277660	68337928
PBLD_chr10_68277660_68337928	0/0	t0008	1720	1	0	0	0	0	1	copy fasta	PBLD	chr10	68277660	68337928
PBLD_chr10_68277660_68337928	0/0	t0009	1720	1	1	0	0	0	0	copy fasta	PBLD	chr10	68277660	68337928
PBLD_chr10_68277660_68337928	0/0	t0010	1722	1	0	0	0	1	0	copy fasta	PBLD	chr10	68277660	68337928
PBLD_chr10_68277660_68337928	0/0	t0011	1721	1	0	0	1	0	0	copy fasta	PBLD	chr10	68277660	68337928
PBLD_chr10_68277660_68337928	0/0	t0012	1719	1	1	0	0	0	0	copy fasta	PBLD	chr10	68277660	68337928
PBLD_chr10_68277660_68337928	0/0	t0013	1721	1	1	0	0	0	0	copy fasta	PBLD	chr10	68277660	68337928
PBOV1_chr6_138210986_138223491	1/0	t0001	2099	233	49	48	99	6	30	copy fasta	PBOV1	chr6	138210986	138223491
PBOV1_chr6_138210986_138223491	0/1	t0002	2099	80	3	9	64	1	2	copy fasta	PBOV1	chr6	138210986	138223491
PBOV1_chr6_138210986_138223491	0/0	t0003	2098	31	20	1	4	0	6	copy fasta	PBOV1	chr6	138210986	138223491
PBOV1_chr6_138210986_138223491	0/0	t0004	2099	10	9	1	0	0	0	copy fasta	PBOV1	chr6	138210986	138223491
PBOV1_chr6_138210986_138223491	0/0	t0005	2099	6	5	1	0	0	0	copy fasta	PBOV1	chr6	138210986	138223491
PBOV1_chr6_138210986_138223491	0/0	t0006	2099	5	5	0	0	0	0	copy fasta	PBOV1	chr6	138210986	138223491
PBOV1_chr6_138210986_138223491	0/0	t0007	2099	3	0	0	3	0	0	copy fasta	PBOV1	chr6	138210986	138223491
PBOV1_chr6_138210986_138223491	0/0	t0008	2099	2	0	0	2	0	0	copy fasta	PBOV1	chr6	138210986	138223491
PBOV1_chr6_138210986_138223491	0/0	t0009	2099	2	2	0	0	0	0	copy fasta	PBOV1	chr6	138210986	138223491
PBOV1_chr6_138210986_138223491	0/0	t0010	2099	1	0	0	1	0	0	copy fasta	PBOV1	chr6	138210986	138223491
PBOV1_chr6_138210986_138223491	0/0	t0011	2099	1	1	0	0	0	0	copy fasta	PBOV1	chr6	138210986	138223491
PBOV1_chr6_138210986_138223491	0/0	t0012	2099	1	0	0	1	0	0	copy fasta	PBOV1	chr6	138210986	138223491
PBOV1_chr6_138210986_138223491	0/0	t0013	2099	1	0	0	0	1	0	copy fasta	PBOV1	chr6	138210986	138223491
PBOV1_chr6_138210986_138223491	0/0	t0014	2099	1	0	0	0	1	0	copy fasta	PBOV1	chr6	138210986	138223491
PBOV1_chr6_138210986_138223491	0/0	t0015	2099	1	0	0	0	0	1	copy fasta	PBOV1	chr6	138210986	138223491
PBOV1_chr6_138210986_138223491	0/0	t0016	2099	1	0	0	1	0	0	copy fasta	PBOV1	chr6	138210986	138223491
PBOV1_chr6_138210986_138223491	0/0	t0017	2099	1	0	0	1	0	0	copy fasta	PBOV1	chr6	138210986	138223491