JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PBOV1_chr6_138210986_138223491	0/0	t0018	2099	1	0	0	0	1	0	copy fasta	PBOV1	chr6	138210986	138223491
PBOV1_chr6_138210986_138223491	0/0	t0019	2073	1	0	0	1	0	0	copy fasta	PBOV1	chr6	138210986	138223491
PBOV1_chr6_138210986_138223491	0/0	t0020	2099	1	0	0	1	0	0	copy fasta	PBOV1	chr6	138210986	138223491
PBOV1_chr6_138210986_138223491	0/0	t0021	2099	1	0	0	0	0	1	copy fasta	PBOV1	chr6	138210986	138223491
PBRM1_chr3_52540367_52690913	1/0	t0001	2877	159	54	29	58	7	10	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	t0002	2877	99	14	20	47	8	10	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	t0003	2877	13	2	10	0	1	0	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	t0004	2877	5	5	0	0	0	0	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	t0005	2877	4	4	0	0	0	0	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	t0006	2873	3	0	0	3	0	0	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	t0007	2877	2	0	0	1	0	1	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	t0008	2877	2	0	1	0	0	1	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	t0009	2877	2	0	0	2	0	0	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	t0010	2877	1	0	0	1	0	0	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	t0011	2877	1	0	0	1	0	0	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	t0012	2877	1	0	0	1	0	0	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/1	t0013	2877	1	0	0	0	0	0	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	t0014	2877	1	0	0	1	0	0	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	t0015	2877	1	0	1	0	0	0	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	t0016	2877	1	0	1	0	0	0	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	t0017	2877	1	1	0	0	0	0	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	t0018	2877	1	0	0	1	0	0	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	t0019	2877	1	1	0	0	0	0	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	t0020	2877	1	1	0	0	0	0	copy fasta	PBRM1	chr3	52540367	52690913
PBX1_chr1_164554184_164856831	0/0	t0001	5795	68	9	16	34	2	7	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0002	5796	35	15	9	7	0	4	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0003	5797	10	0	1	8	1	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0004	5795	10	6	3	0	1	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0005	5797	4	4	0	0	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0006	5796	4	4	0	0	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0007	5795	4	4	0	0	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0008	5794	3	3	0	0	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0009	5794	3	3	0	0	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0010	5795	3	0	2	1	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0011	5795	2	2	0	0	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0012	5795	2	0	0	0	0	2	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0013	5794	2	2	0	0	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0014	5795	2	0	2	0	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0015	5795	2	2	0	0	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0016	5795	2	2	0	0	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0017	5796	2	0	1	0	0	1	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0018	5796	1	0	0	1	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0019	5795	1	0	0	1	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0020	5796	1	1	0	0	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0021	5795	1	0	0	0	0	1	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0022	5795	1	1	0	0	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0023	5795	1	0	0	0	0	1	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0024	5796	1	0	1	0	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0025	5796	1	0	0	1	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0026	5797	1	0	1	0	0	0	copy fasta	PBX1	chr1	164554184	164856831