JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PBX1_chr1_164554184_164856831	0/0	t0027	5795	1	0	0	0	0	1	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0028	5795	1	1	0	0	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0029	5795	1	0	0	1	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0030	5795	1	0	0	0	0	1	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0031	5794	1	1	0	0	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0032	5795	1	0	0	0	0	1	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0033	5795	1	1	0	0	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0034	5795	1	0	1	0	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0035	5794	1	0	1	0	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0036	5796	1	1	0	0	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0037	5795	1	0	1	0	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0038	5796	1	1	0	0	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0039	5796	1	1	0	0	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0040	5795	1	0	0	0	0	1	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0041	5795	1	1	0	0	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0042	5795	1	0	1	0	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	t0043	5794	1	1	0	0	0	0	copy fasta	PBX1	chr1	164554184	164856831
PBX2_chr6_32179733_32195202	0/0	t0001	1934	71	24	16	15	3	13	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0002	1934	60	1	4	50	1	4	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0003	1935	46	2	11	28	2	3	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0004	1934	32	6	8	10	4	4	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0005	1933	22	0	10	11	0	1	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/1	t0006	1935	21	0	5	10	3	2	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0007	1937	17	14	2	0	0	1	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0008	1934	17	7	2	8	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0009	1931	11	1	5	4	1	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0010	1932	10	0	1	9	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0011	1930	9	0	0	9	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0012	1930	9	6	0	1	1	1	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0013	1931	8	8	0	0	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0014	1930	8	6	2	0	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0015	1936	7	0	0	7	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0016	1936	6	0	0	6	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0017	1934	6	0	2	1	0	3	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0018	1937	6	2	1	3	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0019	1934	4	0	0	4	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0020	1931	3	0	0	3	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0021	1933	3	0	0	3	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0022	1932	3	0	2	0	1	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0023	1935	3	0	0	1	0	2	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0024	1931	3	0	0	0	0	3	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0025	1936	2	1	1	0	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0026	1933	2	0	1	1	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0027	1932	2	2	0	0	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0028	1934	2	0	0	2	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0029	1934	2	2	0	0	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0030	1935	2	0	1	1	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0031	1935	2	0	1	0	0	1	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0032	1936	2	0	0	1	0	1	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0033	1934	1	0	1	0	0	0	copy fasta	PBX2	chr6	32179733	32195202