JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PBX2_chr6_32179733_32195202	0/0	t0034	1934	1	0	0	0	0	1	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0035	1929	1	0	0	1	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0036	1933	1	0	1	0	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0037	1931	1	1	0	0	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0038	1928	1	0	0	1	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0039	1932	1	1	0	0	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0040	1937	1	1	0	0	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0041	1934	1	1	0	0	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0042	1937	1	0	0	1	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0043	1934	1	0	0	1	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0044	1937	1	1	0	0	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0045	1935	1	0	0	1	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0046	1934	1	1	0	0	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0047	1935	1	1	0	0	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0048	1936	1	1	0	0	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0049	1936	1	1	0	0	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0050	1937	1	1	0	0	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0051	1937	1	1	0	0	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0052	1934	1	0	1	0	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0053	1935	1	0	0	1	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0054	1938	1	0	0	1	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0055	1936	1	0	0	1	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0056	1935	1	0	0	1	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0057	1935	1	0	0	0	0	1	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0058	1936	1	0	0	1	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0059	1931	1	0	0	1	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0060	1929	1	0	0	0	0	1	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0061	1932	1	1	0	0	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0062	1929	1	0	0	0	0	1	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0063	1932	1	0	0	1	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0064	1932	1	0	1	0	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0065	1935	1	0	1	0	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	t0066	1935	1	0	0	0	0	1	copy fasta	PBX2	chr6	32179733	32195202
PBX3_chr9_125742373_125972377	0/0	t0001	1535	106	42	13	41	2	8	copy fasta	PBX3	chr9	125742373	125972377
PBX3_chr9_125742373_125972377	0/1	t0002	1537	72	10	8	45	3	5	copy fasta	PBX3	chr9	125742373	125972377
PBX3_chr9_125742373_125972377	0/0	t0003	1537	32	7	12	3	4	6	copy fasta	PBX3	chr9	125742373	125972377
PBX3_chr9_125742373_125972377	0/0	t0004	1536	31	0	5	25	0	1	copy fasta	PBX3	chr9	125742373	125972377
PBX3_chr9_125742373_125972377	0/0	t0005	1535	16	15	1	0	0	0	copy fasta	PBX3	chr9	125742373	125972377
PBX3_chr9_125742373_125972377	1/0	t0006	1536	7	3	0	1	0	2	copy fasta	PBX3	chr9	125742373	125972377
PBX3_chr9_125742373_125972377	0/0	t0007	1538	6	0	1	3	0	2	copy fasta	PBX3	chr9	125742373	125972377
PBX3_chr9_125742373_125972377	0/0	t0008	1538	6	0	0	6	0	0	copy fasta	PBX3	chr9	125742373	125972377
PBX3_chr9_125742373_125972377	0/0	t0009	1536	4	3	1	0	0	0	copy fasta	PBX3	chr9	125742373	125972377
PBX3_chr9_125742373_125972377	0/0	t0010	1535	4	0	3	0	1	0	copy fasta	PBX3	chr9	125742373	125972377
PBX3_chr9_125742373_125972377	0/0	t0011	1535	3	3	0	0	0	0	copy fasta	PBX3	chr9	125742373	125972377
PBX3_chr9_125742373_125972377	0/0	t0012	1535	2	0	2	0	0	0	copy fasta	PBX3	chr9	125742373	125972377
PBX3_chr9_125742373_125972377	0/0	t0013	1536	1	0	0	0	0	1	copy fasta	PBX3	chr9	125742373	125972377
PBX3_chr9_125742373_125972377	0/0	t0014	1535	1	0	0	1	0	0	copy fasta	PBX3	chr9	125742373	125972377
PBX3_chr9_125742373_125972377	0/0	t0015	1537	1	0	0	1	0	0	copy fasta	PBX3	chr9	125742373	125972377
PBX3_chr9_125742373_125972377	0/0	t0016	1535	1	1	0	0	0	0	copy fasta	PBX3	chr9	125742373	125972377
PBX3_chr9_125742373_125972377	0/0	t0017	1536	1	0	0	0	0	1	copy fasta	PBX3	chr9	125742373	125972377