JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PBX4_chr19_19556713_19623687	1/1	t0001	371	375	74	75	162	16	46	copy fasta	PBX4	chr19	19556713	19623687
PBX4_chr19_19556713_19623687	0/0	t0002	371	1	0	1	0	0	0	copy fasta	PBX4	chr19	19556713	19623687
PBXIP1_chr1_154939080_154961099	0/0	t0001	1013	140	14	29	74	3	20	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	t0002	1012	84	26	23	16	11	8	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	t0003	1013	35	34	1	0	0	0	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	t0004	1013	9	9	0	0	0	0	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	t0005	1012	7	1	3	1	2	0	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	t0006	1013	4	0	0	4	0	0	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	t0007	1012	3	3	0	0	0	0	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	t0008	1012	2	2	0	0	0	0	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	t0009	1012	1	0	0	1	0	0	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	t0010	1012	1	1	0	0	0	0	copy fasta	PBXIP1	chr1	154939080	154961099
PCARE_chr2_29056695_29079523	0/0	t0001	3437	68	3	21	28	4	12	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/1	t0002	3437	53	8	6	28	4	6	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0003	3437	53	0	0	51	0	2	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0004	3437	31	0	10	20	0	1	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0005	3437	21	2	0	16	0	3	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0006	3437	17	3	2	10	1	1	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0007	3437	13	0	0	13	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0008	3437	12	1	6	0	3	2	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0009	3437	12	11	1	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0010	3434	12	1	7	0	2	2	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0011	3434	10	0	1	8	0	1	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0012	3434	9	0	0	9	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0013	3437	7	0	0	7	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0014	3437	6	0	1	0	1	4	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0015	3437	5	5	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0016	3437	4	0	0	4	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0017	3437	4	0	0	4	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0018	3437	4	0	2	0	1	1	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0019	3437	4	3	1	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0020	3430	4	4	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0021	3434	4	1	2	0	1	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0022	3437	4	0	0	4	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0023	3437	3	2	1	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0024	3430	3	3	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0025	3437	3	0	0	3	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	1/0	t0026	3437	3	2	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0027	3437	3	2	1	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0028	3437	3	2	1	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0029	3437	3	0	0	3	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0030	3437	3	0	2	0	0	1	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0031	3437	3	3	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0032	3437	3	3	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0033	3437	3	0	0	1	0	2	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0034	3437	2	1	1	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0035	3437	2	2	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0036	3437	2	1	1	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0037	3437	2	2	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0038	3437	2	1	1	0	0	0	copy fasta	PCARE	chr2	29056695	29079523