JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCARE_chr2_29056695_29079523	0/0	t0089	3437	1	0	0	1	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0090	3437	1	0	0	1	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0091	3437	1	0	1	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	t0092	3437	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCBD1_chr10_70878510_70893565	0/1	t0001	473	351	75	55	164	16	40	copy fasta	PCBD1	chr10	70878510	70893565
PCBD1_chr10_70878510_70893565	1/0	t0002	473	92	22	19	38	2	10	copy fasta	PCBD1	chr10	70878510	70893565
PCBD1_chr10_70878510_70893565	0/0	t0003	473	5	1	4	0	0	0	copy fasta	PCBD1	chr10	70878510	70893565
PCBD2_chr5_134900131_134967644	1/0	t0001	1973	173	42	32	74	5	19	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/0	t0002	1975	59	13	15	16	7	8	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/0	t0003	1971	27	2	2	22	0	1	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/0	t0004	1985	14	3	1	10	0	0	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/1	t0005	1977	11	3	4	0	1	2	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/0	t0006	1969	9	3	1	5	0	0	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/0	t0007	1972	4	0	0	3	0	1	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/0	t0008	1974	3	0	3	0	0	0	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/0	t0009	1973	3	3	0	0	0	0	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/0	t0010	1971	2	0	0	2	0	0	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/0	t0011	1973	2	2	0	0	0	0	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/0	t0012	1987	2	0	2	0	0	0	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/0	t0013	1993	2	2	0	0	0	0	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/0	t0014	1985	2	2	0	0	0	0	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/0	t0015	1969	1	0	0	1	0	0	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/0	t0016	1977	1	1	0	0	0	0	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/0	t0017	1975	1	1	0	0	0	0	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/0	t0018	1973	1	0	0	1	0	0	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/0	t0019	1973	1	0	0	0	0	1	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/0	t0020	1972	1	0	0	0	1	0	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/0	t0021	1975	1	0	0	0	0	1	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/0	t0022	1973	1	0	0	0	0	1	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/0	t0023	1973	1	0	0	1	0	0	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/0	t0024	1977	1	1	0	0	0	0	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/0	t0025	1997	1	1	0	0	0	0	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/0	t0026	1995	1	1	0	0	0	0	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/0	t0027	1991	1	0	1	0	0	0	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/0	t0028	1987	1	0	0	1	0	0	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/0	t0029	1983	1	1	0	0	0	0	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/0	t0030	1973	1	1	0	0	0	0	copy fasta	PCBD2	chr5	134900131	134967644
PCBD2_chr5_134900131_134967644	0/0	t0031	1983	1	0	1	0	0	0	copy fasta	PCBD2	chr5	134900131	134967644
PCBP1_chr2_70082477_70094203	1/1	t0001	657	392	85	71	174	18	42	copy fasta	PCBP1	chr2	70082477	70094203
PCBP1_chr2_70082477_70094203	0/0	t0002	657	6	5	1	0	0	0	copy fasta	PCBP1	chr2	70082477	70094203
PCBP1_chr2_70082477_70094203	0/0	t0003	657	2	0	2	0	0	0	copy fasta	PCBP1	chr2	70082477	70094203
PCBP1_chr2_70082477_70094203	0/0	t0004	657	1	0	0	1	0	0	copy fasta	PCBP1	chr2	70082477	70094203
PCBP1_chr2_70082477_70094203	0/0	t0005	657	1	0	0	1	0	0	copy fasta	PCBP1	chr2	70082477	70094203
PCBP1_chr2_70082477_70094203	0/0	t0006	657	1	1	0	0	0	0	copy fasta	PCBP1	chr2	70082477	70094203
PCBP1_chr2_70082477_70094203	0/0	t0007	657	1	1	0	0	0	0	copy fasta	PCBP1	chr2	70082477	70094203
PCBP2_chr12_53447102_53486162	0/0	t0001	2088	235	55	37	111	10	22	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0002	2087	19	12	2	5	0	0	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0003	2089	18	1	3	11	0	3	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0004	2089	10	2	1	4	0	3	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/1	t0005	2088	9	0	3	0	1	4	copy fasta	PCBP2	chr12	53447102	53486162