JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCBP2_chr12_53447102_53486162	0/0	t0006	2089	7	0	1	5	0	1	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0007	2086	6	4	2	0	0	0	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0008	2087	5	0	0	0	0	5	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0009	2086	4	4	0	0	0	0	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0010	2088	4	0	3	0	1	0	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0011	2088	3	1	2	0	0	0	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0012	2088	3	0	0	0	0	3	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0013	2090	2	0	0	2	0	0	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0014	2090	2	0	0	0	0	2	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0015	2088	2	0	0	1	0	1	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0016	2091	1	0	0	1	0	0	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0017	2107	1	0	1	0	0	0	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0018	2088	1	0	0	1	0	0	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	1/0	t0019	2071	1	0	0	0	0	0	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0020	2087	1	0	1	0	0	0	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0021	2087	1	1	0	0	0	0	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0022	2088	1	0	0	1	0	0	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0023	2088	1	0	0	1	0	0	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0024	2088	1	0	1	0	0	0	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0025	2088	1	1	0	0	0	0	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0026	2088	1	0	0	0	0	1	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0027	2088	1	1	0	0	0	0	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0028	2088	1	1	0	0	0	0	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0029	2088	1	1	0	0	0	0	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0030	2089	1	0	1	0	0	0	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0031	2090	1	0	0	1	0	0	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0032	2088	1	0	1	0	0	0	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0033	2088	1	0	1	0	0	0	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	t0034	2089	1	0	0	0	0	1	copy fasta	PCBP2	chr12	53447102	53486162
PCBP3_chr21_45638725_45947450	0/0	t0001	1167	86	6	19	43	4	14	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/1	t0002	1167	84	29	16	21	2	15	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/0	t0003	1167	57	25	3	26	0	3	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/0	t0004	1167	19	7	7	0	3	2	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/0	t0005	1167	7	0	2	0	1	4	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/0	t0006	1167	5	0	3	1	0	1	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/0	t0007	1167	5	0	0	5	0	0	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	1/0	t0008	1167	4	0	3	0	0	0	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/0	t0009	1167	3	3	0	0	0	0	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/0	t0010	1167	3	3	0	0	0	0	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/0	t0011	1167	2	2	0	0	0	0	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/0	t0012	1167	2	0	2	0	0	0	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/0	t0013	1167	2	0	2	0	0	0	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/0	t0014	1167	2	2	0	0	0	0	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/0	t0015	1167	1	1	0	0	0	0	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/0	t0016	1167	1	0	1	0	0	0	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/0	t0017	1167	1	1	0	0	0	0	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/0	t0018	1167	1	1	0	0	0	0	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/0	t0019	1167	1	1	0	0	0	0	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/0	t0020	1167	1	1	0	0	0	0	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/0	t0021	1167	1	0	1	0	0	0	copy fasta	PCBP3	chr21	45638725	45947450